miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 54696 0.69 0.426187
Target:  5'- aGCGguUGCGgugacgugguggugGCCCGuCCGUCGuugcccgcCCGGCg -3'
miRNA:   3'- -CGCguAUGC--------------UGGGC-GGCAGCu-------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 54650 0.67 0.527314
Target:  5'- cUGCAaGCGAUCUGCCGU-GACUGuCa -3'
miRNA:   3'- cGCGUaUGCUGGGCGGCAgCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 53662 0.67 0.577478
Target:  5'- uGUGCAgGCGGCaacucgaucaaGUCGUCGACgGGCa -3'
miRNA:   3'- -CGCGUaUGCUGgg---------CGGCAGCUGgCUG- -5'
24842 3' -57.7 NC_005284.1 + 53654 0.71 0.318866
Target:  5'- -aGCAcgaugGCGACgCGCCGUCGcCCGGg -3'
miRNA:   3'- cgCGUa----UGCUGgGCGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 53481 0.69 0.419731
Target:  5'- uUGCAUGCGAgaagcCCCGCCGguUCG-CCGcGCg -3'
miRNA:   3'- cGCGUAUGCU-----GGGCGGC--AGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 51585 0.66 0.622195
Target:  5'- uCGCGUugG-CUggaGCCGUCGuuccCCGGCa -3'
miRNA:   3'- cGCGUAugCuGGg--CGGCAGCu---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 50857 0.67 0.579595
Target:  5'- -aGCGUGCGAaucCCCGUuuuuuCGUUGuaauCCGACg -3'
miRNA:   3'- cgCGUAUGCU---GGGCG-----GCAGCu---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 50520 0.67 0.558509
Target:  5'- cCGgGUGCGAgUCGCCGccgcucuugCGGCCGAa -3'
miRNA:   3'- cGCgUAUGCUgGGCGGCa--------GCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 50125 0.68 0.517056
Target:  5'- cGCGCAcGCGGCguUCGCCaUgGACCGGa -3'
miRNA:   3'- -CGCGUaUGCUG--GGCGGcAgCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 48022 0.68 0.496791
Target:  5'- cGCGCG--UGACCgUGUCGUCGACCc-- -3'
miRNA:   3'- -CGCGUauGCUGG-GCGGCAGCUGGcug -5'
24842 3' -57.7 NC_005284.1 + 47899 0.68 0.496791
Target:  5'- cGCGCuUGCGcgagcaguuCCCGCCGaCGGCCa-- -3'
miRNA:   3'- -CGCGuAUGCu--------GGGCGGCaGCUGGcug -5'
24842 3' -57.7 NC_005284.1 + 47626 0.68 0.496791
Target:  5'- cGCGCugaagcuUGCGAa--GCUGUCGcCCGACg -3'
miRNA:   3'- -CGCGu------AUGCUgggCGGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 47265 0.69 0.438331
Target:  5'- uCGuCGUuCGACUgguaauUGCCGUCGACCGAg -3'
miRNA:   3'- cGC-GUAuGCUGG------GCGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 47135 0.7 0.39275
Target:  5'- aCGCucgucACGgacccgaagcACCCGCUGUaCGACCGGCg -3'
miRNA:   3'- cGCGua---UGC----------UGGGCGGCA-GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 46876 0.67 0.567973
Target:  5'- aGCGCuu-CGAUCCagaacauGCgGUCG-CCGACg -3'
miRNA:   3'- -CGCGuauGCUGGG-------CGgCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 46440 0.7 0.401618
Target:  5'- cCGCAUGCaGAUCCGCaCGaUCGucugcaACCGGCg -3'
miRNA:   3'- cGCGUAUG-CUGGGCG-GC-AGC------UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 46435 0.66 0.622195
Target:  5'- -aGCGaACGAaccgaUCGCCGUCG-CCGAa -3'
miRNA:   3'- cgCGUaUGCUg----GGCGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 46160 0.74 0.231381
Target:  5'- cGCGCAccgcauugaaaUACGAgCCgGCCGUCGACgagaGACc -3'
miRNA:   3'- -CGCGU-----------AUGCU-GGgCGGCAGCUGg---CUG- -5'
24842 3' -57.7 NC_005284.1 + 45853 0.68 0.505868
Target:  5'- cGCGUuguuUGCGAUCCGCUGauacagcUCGGCUGuCg -3'
miRNA:   3'- -CGCGu---AUGCUGGGCGGC-------AGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 45691 0.66 0.600845
Target:  5'- aCGCcuucACGA-CCGCgCGUCGACaCGGCu -3'
miRNA:   3'- cGCGua--UGCUgGGCG-GCAGCUG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.