miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 43831 0.66 0.643578
Target:  5'- uUGUAUGCG-UCCGCuCGUCcggcgacgaGGCCGGCc -3'
miRNA:   3'- cGCGUAUGCuGGGCG-GCAG---------CUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 50857 0.67 0.579595
Target:  5'- -aGCGUGCGAaucCCCGUuuuuuCGUUGuaauCCGACg -3'
miRNA:   3'- cgCGUAUGCU---GGGCG-----GCAGCu---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 23448 0.67 0.569027
Target:  5'- aGCGCGUGu--UCUGCgCGUCGcucGCCGACg -3'
miRNA:   3'- -CGCGUAUgcuGGGCG-GCAGC---UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37933 1.11 0.000466
Target:  5'- uGCGCAUACGACCCGCCGUCGACCGACa -3'
miRNA:   3'- -CGCGUAUGCUGGGCGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 39440 0.66 0.622195
Target:  5'- aGC-CAU-CGGCCUGCaCGcCGAgCGACa -3'
miRNA:   3'- -CGcGUAuGCUGGGCG-GCaGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37117 0.66 0.622195
Target:  5'- uCGC--GCGAuCCCGUCGUCGuCCuGCa -3'
miRNA:   3'- cGCGuaUGCU-GGGCGGCAGCuGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 22107 0.66 0.611511
Target:  5'- gGCGCuUGCGGUCCGCUGgccccCG-CCGAUg -3'
miRNA:   3'- -CGCGuAUGCUGGGCGGCa----GCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7325 0.66 0.600845
Target:  5'- -aGCAUGCGAgCCaucuucucgGCCcgGUUGAUCGGCg -3'
miRNA:   3'- cgCGUAUGCUgGG---------CGG--CAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 40108 0.66 0.58914
Target:  5'- uGCGUcgGCauuucuucguucgGGUCCGCCGUCGgauuGCCGGCc -3'
miRNA:   3'- -CGCGuaUG-------------CUGGGCGGCAGC----UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 32141 0.67 0.579595
Target:  5'- aGCGUGUGCGGCCgaUCGUaaCGAUCGAUg -3'
miRNA:   3'- -CGCGUAUGCUGGgcGGCA--GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 28423 0.67 0.579595
Target:  5'- cGCGCGUGuuguagacCGGCgCGCCGgcgUUGACCGuGCc -3'
miRNA:   3'- -CGCGUAU--------GCUGgGCGGC---AGCUGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 9230 0.66 0.590203
Target:  5'- uGCGCGgGCGACgCGCCacgCGG-CGGCa -3'
miRNA:   3'- -CGCGUaUGCUGgGCGGca-GCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 43457 0.66 0.643578
Target:  5'- cGCGCAguugcGCGAUCCGCUGcCGGauguugUCGAg -3'
miRNA:   3'- -CGCGUa----UGCUGGGCGGCaGCU------GGCUg -5'
24842 3' -57.7 NC_005284.1 + 5425 0.67 0.579595
Target:  5'- cGCGCucgGCGAa--GCUG-CGACCGAUa -3'
miRNA:   3'- -CGCGua-UGCUgggCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 8978 0.66 0.643578
Target:  5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3'
miRNA:   3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45539 0.66 0.597649
Target:  5'- aGCGUauccGUGCcGCCCGCCGcgcgcgucagcgccUCGAcgagauuaCCGACg -3'
miRNA:   3'- -CGCG----UAUGcUGGGCGGC--------------AGCU--------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38757 0.67 0.579595
Target:  5'- gGCGCAaUGCGGauCUCGUCG-CGcCCGACc -3'
miRNA:   3'- -CGCGU-AUGCU--GGGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 9575 0.67 0.569027
Target:  5'- cGCGCu--CGAUCUcguGCCGuUCGACaCGGCc -3'
miRNA:   3'- -CGCGuauGCUGGG---CGGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 44655 0.66 0.632887
Target:  5'- cGCGCGaGCG-CCgucugCGCCGUCG-CCGcGCu -3'
miRNA:   3'- -CGCGUaUGCuGG-----GCGGCAGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 7896 0.66 0.621126
Target:  5'- -aGCAUGCGAa-CGCCGgguucaaUCG-CCGGCg -3'
miRNA:   3'- cgCGUAUGCUggGCGGC-------AGCuGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.