Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24843 | 5' | -58.5 | NC_005284.1 | + | 9634 | 0.66 | 0.568221 |
Target: 5'- aGCGGCGGaggcuucagCGcaggCCGAgcucgcgggcaUGCGAGCGa -3' miRNA: 3'- gCGCCGUCga-------GCua--GGCU-----------ACGCUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 684 | 0.66 | 0.568221 |
Target: 5'- cCGaUGGaAGUUCGAUCCGGaggcgGCcGAGCGa -3' miRNA: 3'- -GC-GCCgUCGAGCUAGGCUa----CG-CUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 49477 | 0.66 | 0.557662 |
Target: 5'- aCGaCGGCGaagcGCUCGAaguaCCGcaacacgaaGUGCGAGCa -3' miRNA: 3'- -GC-GCCGU----CGAGCUa---GGC---------UACGCUCGc -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 19936 | 0.66 | 0.547161 |
Target: 5'- cCGCGacgguaauaGCAGCaaUCGAcgCCGGUGcCGGGCu -3' miRNA: 3'- -GCGC---------CGUCG--AGCUa-GGCUAC-GCUCGc -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 7370 | 0.66 | 0.547161 |
Target: 5'- aCGCGGCcgaucuGGCguucgUCGAUCUGAgUGCGAcggGCa -3' miRNA: 3'- -GCGCCG------UCG-----AGCUAGGCU-ACGCU---CGc -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 33447 | 0.66 | 0.547161 |
Target: 5'- gCGCGGUAG-UCGAUCCGcaGUGCuuacacGCGc -3' miRNA: 3'- -GCGCCGUCgAGCUAGGC--UACGcu----CGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 21164 | 0.66 | 0.547161 |
Target: 5'- cCGCGcGCGGCUCGAgcaaCGGcucauCGAGCa -3' miRNA: 3'- -GCGC-CGUCGAGCUag--GCUac---GCUCGc -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 21525 | 0.66 | 0.547161 |
Target: 5'- gCGCGGCAGCaUCGc-CCacUGCGgaGGCGg -3' miRNA: 3'- -GCGCCGUCG-AGCuaGGcuACGC--UCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 10642 | 0.66 | 0.536722 |
Target: 5'- aGCGGCGGCgaagcgcugcgCGAggaaCUGGUGCGcgccGCGg -3' miRNA: 3'- gCGCCGUCGa----------GCUa---GGCUACGCu---CGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 43622 | 0.66 | 0.526354 |
Target: 5'- gCGCGGCGGC-CG---CGgcGCGAGCu -3' miRNA: 3'- -GCGCCGUCGaGCuagGCuaCGCUCGc -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 47785 | 0.67 | 0.516062 |
Target: 5'- gGCGGC-GCUCGcggaggCGAcggGCGAGCGc -3' miRNA: 3'- gCGCCGuCGAGCuag---GCUa--CGCUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 13361 | 0.67 | 0.516062 |
Target: 5'- gGCGGCaAGCUgacggugggcggCGAUCUGucUGCG-GCGg -3' miRNA: 3'- gCGCCG-UCGA------------GCUAGGCu-ACGCuCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 11257 | 0.67 | 0.516062 |
Target: 5'- aCGCGGCagcGGCUCGcgCggCGAagGgGGGCGg -3' miRNA: 3'- -GCGCCG---UCGAGCuaG--GCUa-CgCUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 927 | 0.67 | 0.49573 |
Target: 5'- gGCcGCuguGCUCGAUgCUGAacugGCGGGCGa -3' miRNA: 3'- gCGcCGu--CGAGCUA-GGCUa---CGCUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 27994 | 0.67 | 0.475768 |
Target: 5'- gCGCGauguuGCAGCUCuAUCCc--GCGGGCGa -3' miRNA: 3'- -GCGC-----CGUCGAGcUAGGcuaCGCUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 24397 | 0.68 | 0.456214 |
Target: 5'- gGCGGCAaUUCGAUCggCGGUGggaaGAGCGu -3' miRNA: 3'- gCGCCGUcGAGCUAG--GCUACg---CUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 21623 | 0.68 | 0.456214 |
Target: 5'- uCGCGcGCcgcGCUCGAcgCCGAgcaGCGuGCGa -3' miRNA: 3'- -GCGC-CGu--CGAGCUa-GGCUa--CGCuCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 33132 | 0.68 | 0.446601 |
Target: 5'- aCGCGGCGGCaUCG-UgCGcgGCGAucGCa -3' miRNA: 3'- -GCGCCGUCG-AGCuAgGCuaCGCU--CGc -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 12752 | 0.68 | 0.443738 |
Target: 5'- aCGCGGCGaagguugccGCgaucaucgauuuccUCGAUCgGcAUGCGGGCGc -3' miRNA: 3'- -GCGCCGU---------CG--------------AGCUAGgC-UACGCUCGC- -5' |
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24843 | 5' | -58.5 | NC_005284.1 | + | 20827 | 0.68 | 0.427719 |
Target: 5'- cCGCaGCAGCgcCGG-CCGAcgaGCGGGCGg -3' miRNA: 3'- -GCGcCGUCGa-GCUaGGCUa--CGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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