miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24865 3' -65.5 NC_005284.1 + 6984 0.66 0.266088
Target:  5'- cGCGCgCCgccaaGCGCuCGCCCGuCGCCUc -3'
miRNA:   3'- aCGCG-GGagc--UGCG-GCGGGC-GUGGGu -5'
24865 3' -65.5 NC_005284.1 + 32034 0.66 0.266088
Target:  5'- cGCGCCCcuugaUCGACcgcaGCCGCUCG-GCCa- -3'
miRNA:   3'- aCGCGGG-----AGCUG----CGGCGGGCgUGGgu -5'
24865 3' -65.5 NC_005284.1 + 33261 0.66 0.259779
Target:  5'- gUGCGCCgaucaggugCUCGACGCaagCGCCgGcCGCCa- -3'
miRNA:   3'- -ACGCGG---------GAGCUGCG---GCGGgC-GUGGgu -5'
24865 3' -65.5 NC_005284.1 + 3942 0.66 0.253592
Target:  5'- -aUGCCUUCGuccggaaaACGCCcgGCCC-CACCCAa -3'
miRNA:   3'- acGCGGGAGC--------UGCGG--CGGGcGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 38007 0.66 0.253592
Target:  5'- cGUGUCCU-GACGCuguagCGCCgGCACaCCGa -3'
miRNA:   3'- aCGCGGGAgCUGCG-----GCGGgCGUG-GGU- -5'
24865 3' -65.5 NC_005284.1 + 28381 0.66 0.253592
Target:  5'- cGuCGCCCaccucgaagCGGCGCaGCCaCGCugCCGu -3'
miRNA:   3'- aC-GCGGGa--------GCUGCGgCGG-GCGugGGU- -5'
24865 3' -65.5 NC_005284.1 + 6451 0.66 0.253592
Target:  5'- aGCGCgagaaucaUCUCGcCGCCGCCUuccggauaGCGCUCGa -3'
miRNA:   3'- aCGCG--------GGAGCuGCGGCGGG--------CGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 31418 0.66 0.253592
Target:  5'- uUGCGCCaguUCGcgggcgacguGCGCCGCUgcggCGCGCCgGg -3'
miRNA:   3'- -ACGCGGg--AGC----------UGCGGCGG----GCGUGGgU- -5'
24865 3' -65.5 NC_005284.1 + 49986 0.66 0.247528
Target:  5'- gUGCGCCUUCGGCuacuGCCGCUgCGUugUUc -3'
miRNA:   3'- -ACGCGGGAGCUG----CGGCGG-GCGugGGu -5'
24865 3' -65.5 NC_005284.1 + 13186 0.66 0.247528
Target:  5'- -uCGCaCUCGGCGCgGCCuCGCGCgCGu -3'
miRNA:   3'- acGCGgGAGCUGCGgCGG-GCGUGgGU- -5'
24865 3' -65.5 NC_005284.1 + 41048 0.66 0.246928
Target:  5'- cGCGCCgacguuuCUCGcgggGCGCCGCgUGCcucCCCAg -3'
miRNA:   3'- aCGCGG-------GAGC----UGCGGCGgGCGu--GGGU- -5'
24865 3' -65.5 NC_005284.1 + 45798 0.66 0.246928
Target:  5'- gGCGUCggcaugCUCGGCGaagguguCCGCaCCGCACUCGa -3'
miRNA:   3'- aCGCGG------GAGCUGC-------GGCG-GGCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 35648 0.66 0.241583
Target:  5'- cUGCGUCagguucaCGAUGCCGUUCGCGCgCGg -3'
miRNA:   3'- -ACGCGGga-----GCUGCGGCGGGCGUGgGU- -5'
24865 3' -65.5 NC_005284.1 + 36734 0.66 0.241583
Target:  5'- aGCGCCCgccaccggaUCGGCGUCGaa-GCGCUCGg -3'
miRNA:   3'- aCGCGGG---------AGCUGCGGCgggCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 44087 0.66 0.241583
Target:  5'- cGCGCCUUucugcgaagCGAgGcCCGCCgugucgauCGCGCCCGc -3'
miRNA:   3'- aCGCGGGA---------GCUgC-GGCGG--------GCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 9141 0.66 0.241583
Target:  5'- cGCGCaCCgaCGAgcCGCCaGCCUGC-CCCGc -3'
miRNA:   3'- aCGCG-GGa-GCU--GCGG-CGGGCGuGGGU- -5'
24865 3' -65.5 NC_005284.1 + 6155 0.66 0.235758
Target:  5'- uUGCaCCCUuuaCGuCGUCGUuuGCACCCu -3'
miRNA:   3'- -ACGcGGGA---GCuGCGGCGggCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 44681 0.66 0.235758
Target:  5'- cGCGCUUUCGGuCGCCGUCUuCagACCCGc -3'
miRNA:   3'- aCGCGGGAGCU-GCGGCGGGcG--UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 43442 0.67 0.229488
Target:  5'- uUGCGaccgCCUCGACGCgcaguugCGCgauCCGCugCCGg -3'
miRNA:   3'- -ACGCg---GGAGCUGCG-------GCG---GGCGugGGU- -5'
24865 3' -65.5 NC_005284.1 + 12946 0.67 0.229488
Target:  5'- aGUGCUgCUCGGCGCCccacuuuGUCCGCAuUCCGc -3'
miRNA:   3'- aCGCGG-GAGCUGCGG-------CGGGCGU-GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.