miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 3' -53.5 NC_005284.1 + 10456 0.66 0.829843
Target:  5'- uCCAcagaGCGAUuucgAGuGCCGCGGgCAUG-GCa -3'
miRNA:   3'- -GGU----UGUUG----UCuCGGCGCCaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 1459 0.66 0.820653
Target:  5'- gCCAGCAGCAGcG-UGCGauuaaGUC-UGCGCg -3'
miRNA:   3'- -GGUUGUUGUCuCgGCGC-----CAGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 19795 0.66 0.820653
Target:  5'- -gGACGGCAGcGCgGCGG-CAgaucucucGCGCg -3'
miRNA:   3'- ggUUGUUGUCuCGgCGCCaGUa-------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 42950 0.66 0.820653
Target:  5'- gCCAcuugaagaaauACAACAGGgaguuuGCCGCGGgg--GCGUu -3'
miRNA:   3'- -GGU-----------UGUUGUCU------CGGCGCCaguaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 28766 0.66 0.811262
Target:  5'- gCCGACAuc-GAGCCcCGG-CAuaauuUGCGCg -3'
miRNA:   3'- -GGUUGUuguCUCGGcGCCaGU-----ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 4641 0.66 0.811262
Target:  5'- gCAGCGGCGuGAGCgGCagcaacucgcuGGUCGU-CGCg -3'
miRNA:   3'- gGUUGUUGU-CUCGgCG-----------CCAGUAcGCG- -5'
24870 3' -53.5 NC_005284.1 + 19641 0.66 0.811262
Target:  5'- gCAuACAACGGAGCCGacCGGgcgcaCAUcCGCa -3'
miRNA:   3'- gGU-UGUUGUCUCGGC--GCCa----GUAcGCG- -5'
24870 3' -53.5 NC_005284.1 + 14894 0.66 0.80168
Target:  5'- gUCAGCGcaaACGcGAGCCGUGaGaCGUGgGCg -3'
miRNA:   3'- -GGUUGU---UGU-CUCGGCGC-CaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 9085 0.66 0.80168
Target:  5'- --cGCGGCGGGGCaguugCGCGGUCAggaucugaauaGCGUg -3'
miRNA:   3'- gguUGUUGUCUCG-----GCGCCAGUa----------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 21830 0.67 0.781987
Target:  5'- cCCGGCGcuucCAGcGCCGcCGG-CGUGgGCg -3'
miRNA:   3'- -GGUUGUu---GUCuCGGC-GCCaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 4440 0.67 0.771897
Target:  5'- cCCGGCAcacGCAGAaagcacgguucGCCGCGG-CAcGcCGCc -3'
miRNA:   3'- -GGUUGU---UGUCU-----------CGGCGCCaGUaC-GCG- -5'
24870 3' -53.5 NC_005284.1 + 15762 0.67 0.771897
Target:  5'- gCCGACAGCu--GCaCGaCGGUgcUGCGCu -3'
miRNA:   3'- -GGUUGUUGucuCG-GC-GCCAguACGCG- -5'
24870 3' -53.5 NC_005284.1 + 29855 0.67 0.761661
Target:  5'- aUCGGCGACGGAGggauCUGCG-UCAUGuCGUa -3'
miRNA:   3'- -GGUUGUUGUCUC----GGCGCcAGUAC-GCG- -5'
24870 3' -53.5 NC_005284.1 + 11329 0.67 0.751291
Target:  5'- uCCGGCAGCGGA-UCGCGcaacUGCGCg -3'
miRNA:   3'- -GGUUGUUGUCUcGGCGCcaguACGCG- -5'
24870 3' -53.5 NC_005284.1 + 23897 0.67 0.740797
Target:  5'- cCCGACu---GGGCU-CGGUCGcUGCGCg -3'
miRNA:   3'- -GGUUGuuguCUCGGcGCCAGU-ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 19201 0.67 0.740797
Target:  5'- aCGACAACGcGGCCGCuGUaCAaaccgugGCGCa -3'
miRNA:   3'- gGUUGUUGUcUCGGCGcCA-GUa------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 17074 0.67 0.740797
Target:  5'- gCCuuuCGGCGGGGCgGCccgUAUGCGCg -3'
miRNA:   3'- -GGuu-GUUGUCUCGgCGccaGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 11310 0.68 0.719487
Target:  5'- --cGCGACAGuAGCCGguCGGaUCuUGCGCc -3'
miRNA:   3'- gguUGUUGUC-UCGGC--GCC-AGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 24928 0.68 0.708694
Target:  5'- aCGACAugacGCAGAucccuCCGCGccgaUCAUGCGCu -3'
miRNA:   3'- gGUUGU----UGUCUc----GGCGCc---AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 453 0.68 0.708694
Target:  5'- cCCGGCGagccgGCAGcGCC-UGGUCG-GCGCa -3'
miRNA:   3'- -GGUUGU-----UGUCuCGGcGCCAGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.