miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 3' -53.5 NC_005284.1 + 54461 0.7 0.565448
Target:  5'- uCCGAC-GCGGuG-CGCGGcaaucgUCAUGCGCg -3'
miRNA:   3'- -GGUUGuUGUCuCgGCGCC------AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 54455 0.73 0.411529
Target:  5'- gUCGACGACAGGGCCguuGCGaGUCAaaucguccUGgGCg -3'
miRNA:   3'- -GGUUGUUGUCUCGG---CGC-CAGU--------ACgCG- -5'
24870 3' -53.5 NC_005284.1 + 47697 0.69 0.653815
Target:  5'- aCGGCAAggaAGGGCaCGCGcGcucgCGUGCGCa -3'
miRNA:   3'- gGUUGUUg--UCUCG-GCGC-Ca---GUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 47362 0.71 0.554557
Target:  5'- uCCAGCGAUcccGaaGCGcGUCAUGCGCg -3'
miRNA:   3'- -GGUUGUUGucuCggCGC-CAGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 45876 0.73 0.434484
Target:  5'- aCAGCucggcugucgcgucgAGCGGuuGCCGUGGUCGcGCGCg -3'
miRNA:   3'- gGUUG---------------UUGUCu-CGGCGCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 44694 0.7 0.609476
Target:  5'- gCCGuCuuCAGAcccGCCGCGGUCGcggucgccGCGCg -3'
miRNA:   3'- -GGUuGuuGUCU---CGGCGCCAGUa-------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 43848 0.69 0.620555
Target:  5'- uCCGGCGACGaGGCCggccauGCGGgCcUGCGCa -3'
miRNA:   3'- -GGUUGUUGUcUCGG------CGCCaGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 42950 0.66 0.820653
Target:  5'- gCCAcuugaagaaauACAACAGGgaguuuGCCGCGGgg--GCGUu -3'
miRNA:   3'- -GGU-----------UGUUGUCU------CGGCGCCaguaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 37372 0.71 0.543728
Target:  5'- uUCGACGuu-GAcGCCGCGGUCGU-CGCc -3'
miRNA:   3'- -GGUUGUuguCU-CGGCGCCAGUAcGCG- -5'
24870 3' -53.5 NC_005284.1 + 36241 0.71 0.501185
Target:  5'- aCGGCGGCGGAGUgGUuuucccGGUCAguUGCGUa -3'
miRNA:   3'- gGUUGUUGUCUCGgCG------CCAGU--ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 33314 0.68 0.702181
Target:  5'- gCCAACAgauACAGAGCUGCuuucGGcaucacagcccccgcUCAcaaauUGCGCg -3'
miRNA:   3'- -GGUUGU---UGUCUCGGCG----CC---------------AGU-----ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 33112 0.71 0.511692
Target:  5'- gUCGACGGCGGccaccgccgacGCgGCGGcaUCGUGCGCg -3'
miRNA:   3'- -GGUUGUUGUCu----------CGgCGCC--AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 32966 0.7 0.565448
Target:  5'- gCUGACAACgcuuggAGGGCgGCGGUCAcuCGCu -3'
miRNA:   3'- -GGUUGUUG------UCUCGgCGCCAGUacGCG- -5'
24870 3' -53.5 NC_005284.1 + 29855 0.67 0.761661
Target:  5'- aUCGGCGACGGAGggauCUGCG-UCAUGuCGUa -3'
miRNA:   3'- -GGUUGUUGUCUC----GGCGCcAGUAC-GCG- -5'
24870 3' -53.5 NC_005284.1 + 28766 0.66 0.811262
Target:  5'- gCCGACAuc-GAGCCcCGG-CAuaauuUGCGCg -3'
miRNA:   3'- -GGUUGUuguCUCGGcGCCaGU-----ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 25514 0.69 0.664876
Target:  5'- aCCggUGgaauCGGAGCgGCcgucGUCGUGCGCg -3'
miRNA:   3'- -GGuuGUu---GUCUCGgCGc---CAGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 24928 0.68 0.708694
Target:  5'- aCGACAugacGCAGAucccuCCGCGccgaUCAUGCGCu -3'
miRNA:   3'- gGUUGU----UGUCUc----GGCGCc---AGUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 24457 0.68 0.708694
Target:  5'- cUCAACGuCGuAGCCGCGGUaCGUGaauCGCu -3'
miRNA:   3'- -GGUUGUuGUcUCGGCGCCA-GUAC---GCG- -5'
24870 3' -53.5 NC_005284.1 + 23897 0.67 0.740797
Target:  5'- cCCGACu---GGGCU-CGGUCGcUGCGCg -3'
miRNA:   3'- -GGUUGuuguCUCGGcGCCAGU-ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 23715 0.71 0.510637
Target:  5'- uCCuguCGAUGGAGCCGCugcuugGGUCGguugaccUGCGCu -3'
miRNA:   3'- -GGuu-GUUGUCUCGGCG------CCAGU-------ACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.