miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 3' -53.5 NC_005284.1 + 10456 0.66 0.829843
Target:  5'- uCCAcagaGCGAUuucgAGuGCCGCGGgCAUG-GCa -3'
miRNA:   3'- -GGU----UGUUG----UCuCGGCGCCaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 21310 0.7 0.609476
Target:  5'- gUCGGCAGCAGcgccGGCCGaCGGcgCGUGUaaGCa -3'
miRNA:   3'- -GGUUGUUGUC----UCGGC-GCCa-GUACG--CG- -5'
24870 3' -53.5 NC_005284.1 + 250 0.71 0.543728
Target:  5'- -gGGCuGACAGAgGCCGCuGUCGcgGCGCa -3'
miRNA:   3'- ggUUG-UUGUCU-CGGCGcCAGUa-CGCG- -5'
24870 3' -53.5 NC_005284.1 + 20476 0.94 0.017419
Target:  5'- aCCAACAACAGAGCCGCGcUgAUGCGCu -3'
miRNA:   3'- -GGUUGUUGUCUCGGCGCcAgUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 4440 0.67 0.771897
Target:  5'- cCCGGCAcacGCAGAaagcacgguucGCCGCGG-CAcGcCGCc -3'
miRNA:   3'- -GGUUGU---UGUCU-----------CGGCGCCaGUaC-GCG- -5'
24870 3' -53.5 NC_005284.1 + 29855 0.67 0.761661
Target:  5'- aUCGGCGACGGAGggauCUGCG-UCAUGuCGUa -3'
miRNA:   3'- -GGUUGUUGUCUC----GGCGCcAGUAC-GCG- -5'
24870 3' -53.5 NC_005284.1 + 23897 0.67 0.740797
Target:  5'- cCCGACu---GGGCU-CGGUCGcUGCGCg -3'
miRNA:   3'- -GGUUGuuguCUCGGcGCCAGU-ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 11310 0.68 0.719487
Target:  5'- --cGCGACAGuAGCCGguCGGaUCuUGCGCc -3'
miRNA:   3'- gguUGUUGUC-UCGGC--GCC-AGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 22061 0.68 0.697825
Target:  5'- -aAGCAACaAGGGCUauGCGGcCGgacUGCGCg -3'
miRNA:   3'- ggUUGUUG-UCUCGG--CGCCaGU---ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 44694 0.7 0.609476
Target:  5'- gCCGuCuuCAGAcccGCCGCGGUCGcggucgccGCGCg -3'
miRNA:   3'- -GGUuGuuGUCU---CGGCGCCAGUa-------CGCG- -5'
24870 3' -53.5 NC_005284.1 + 6754 0.69 0.642735
Target:  5'- uCCAACGugcgaAGGGUCGacgacaCGGUCAcGCGCg -3'
miRNA:   3'- -GGUUGUug---UCUCGGC------GCCAGUaCGCG- -5'
24870 3' -53.5 NC_005284.1 + 33314 0.68 0.702181
Target:  5'- gCCAACAgauACAGAGCUGCuuucGGcaucacagcccccgcUCAcaaauUGCGCg -3'
miRNA:   3'- -GGUUGU---UGUCUCGGCG----CC---------------AGU-----ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 28766 0.66 0.811262
Target:  5'- gCCGACAuc-GAGCCcCGG-CAuaauuUGCGCg -3'
miRNA:   3'- -GGUUGUuguCUCGGcGCCaGU-----ACGCG- -5'
24870 3' -53.5 NC_005284.1 + 43848 0.69 0.620555
Target:  5'- uCCGGCGACGaGGCCggccauGCGGgCcUGCGCa -3'
miRNA:   3'- -GGUUGUUGUcUCGG------CGCCaGuACGCG- -5'
24870 3' -53.5 NC_005284.1 + 19641 0.66 0.811262
Target:  5'- gCAuACAACGGAGCCGacCGGgcgcaCAUcCGCa -3'
miRNA:   3'- gGU-UGUUGUCUCGGC--GCCa----GUAcGCG- -5'
24870 3' -53.5 NC_005284.1 + 24457 0.68 0.708694
Target:  5'- cUCAACGuCGuAGCCGCGGUaCGUGaauCGCu -3'
miRNA:   3'- -GGUUGUuGUcUCGGCGCCA-GUAC---GCG- -5'
24870 3' -53.5 NC_005284.1 + 15810 0.69 0.620555
Target:  5'- gCCAGCGcGCAGc-CCGCGGaUCAgcaucGCGCa -3'
miRNA:   3'- -GGUUGU-UGUCucGGCGCC-AGUa----CGCG- -5'
24870 3' -53.5 NC_005284.1 + 9249 0.7 0.587386
Target:  5'- gCGGCGGCauAGAG-CGCGGagCAUGCGUu -3'
miRNA:   3'- gGUUGUUG--UCUCgGCGCCa-GUACGCG- -5'
24870 3' -53.5 NC_005284.1 + 14894 0.66 0.80168
Target:  5'- gUCAGCGcaaACGcGAGCCGUGaGaCGUGgGCg -3'
miRNA:   3'- -GGUUGU---UGU-CUCGGCGC-CaGUACgCG- -5'
24870 3' -53.5 NC_005284.1 + 17074 0.67 0.740797
Target:  5'- gCCuuuCGGCGGGGCgGCccgUAUGCGCg -3'
miRNA:   3'- -GGuu-GUUGUCUCGgCGccaGUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.