miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 5' -52.7 NC_005284.1 + 916 0.66 0.851719
Target:  5'- -cGcCGCAUCcCGGcCGCUGugcucgaugcuGAACUGGCg -3'
miRNA:   3'- cuC-GUGUAGcGCU-GCGAC-----------UUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 23048 0.66 0.851719
Target:  5'- aGAGCGCuAUCGCuGGCuGCgGGAGCgagcaUGGUa -3'
miRNA:   3'- -CUCGUG-UAGCG-CUG-CGaCUUUG-----ACCG- -5'
24870 5' -52.7 NC_005284.1 + 38800 0.66 0.842931
Target:  5'- uGGCGC-UCGaUGGCGUcuUGGAGCUuGGCc -3'
miRNA:   3'- cUCGUGuAGC-GCUGCG--ACUUUGA-CCG- -5'
24870 5' -52.7 NC_005284.1 + 33635 0.66 0.842931
Target:  5'- cGAGcCGCG-CGCGgcauucaucACGCgUGAAgcGCUGGCc -3'
miRNA:   3'- -CUC-GUGUaGCGC---------UGCG-ACUU--UGACCG- -5'
24870 5' -52.7 NC_005284.1 + 30264 0.66 0.833909
Target:  5'- cGGGCGCGuUCGUu-CGCUGucGAgUGGCu -3'
miRNA:   3'- -CUCGUGU-AGCGcuGCGACu-UUgACCG- -5'
24870 5' -52.7 NC_005284.1 + 35582 0.66 0.833909
Target:  5'- cAGUACcucGUCGCGcUGCgGAGACUcaGGCa -3'
miRNA:   3'- cUCGUG---UAGCGCuGCGaCUUUGA--CCG- -5'
24870 5' -52.7 NC_005284.1 + 9585 0.66 0.824666
Target:  5'- aAGCGCAggGCGaucGCGCUGccGCggcGGCg -3'
miRNA:   3'- cUCGUGUagCGC---UGCGACuuUGa--CCG- -5'
24870 5' -52.7 NC_005284.1 + 14896 0.66 0.824666
Target:  5'- cAGCGCAaaCGCGA-GCcgUGAGACgugGGCg -3'
miRNA:   3'- cUCGUGUa-GCGCUgCG--ACUUUGa--CCG- -5'
24870 5' -52.7 NC_005284.1 + 29845 0.66 0.824666
Target:  5'- gGAGCGCAugaUCgGCGACGgaGGGAuCUGcGUc -3'
miRNA:   3'- -CUCGUGU---AG-CGCUGCgaCUUU-GAC-CG- -5'
24870 5' -52.7 NC_005284.1 + 965 0.66 0.824666
Target:  5'- -uGUACGccggCGCGACGaCUGAAaaGCaGGCc -3'
miRNA:   3'- cuCGUGUa---GCGCUGC-GACUU--UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 17684 0.66 0.824666
Target:  5'- -cGCGCGaucgugCGCGACGCccUGAAucucGCcGGCg -3'
miRNA:   3'- cuCGUGUa-----GCGCUGCG--ACUU----UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 48320 0.66 0.805553
Target:  5'- cGAGCGCuAUCcggaaggcgGCGGCGagaUGAuucucgcGCUGGCa -3'
miRNA:   3'- -CUCGUG-UAG---------CGCUGCg--ACUu------UGACCG- -5'
24870 5' -52.7 NC_005284.1 + 45103 0.66 0.805553
Target:  5'- cGAGCGCcgUugacugcuGCGACGCUGcgaucgucGAGCUgaugGGCa -3'
miRNA:   3'- -CUCGUGuaG--------CGCUGCGAC--------UUUGA----CCG- -5'
24870 5' -52.7 NC_005284.1 + 47707 0.66 0.805553
Target:  5'- aGGGCACGcgcgcUCGCGuGCGCaGAAggccguGCUcGGCg -3'
miRNA:   3'- -CUCGUGU-----AGCGC-UGCGaCUU------UGA-CCG- -5'
24870 5' -52.7 NC_005284.1 + 23161 0.66 0.805553
Target:  5'- gGGGCACcgaucGUCGCGGCGCguuccgcucgugUGA---UGGCu -3'
miRNA:   3'- -CUCGUG-----UAGCGCUGCG------------ACUuugACCG- -5'
24870 5' -52.7 NC_005284.1 + 51729 0.67 0.795705
Target:  5'- aAGCGCGuguacggaaagaUCGCGGCGCgccugcgGGAAgUGGa -3'
miRNA:   3'- cUCGUGU------------AGCGCUGCGa------CUUUgACCg -5'
24870 5' -52.7 NC_005284.1 + 33961 0.67 0.795705
Target:  5'- -cGCuCGUCGgcCGGCGCUGcuGCgGGCu -3'
miRNA:   3'- cuCGuGUAGC--GCUGCGACuuUGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 4325 0.67 0.795705
Target:  5'- aAGCGCAUCgGUGACGaagUGAAauccGCcGGCg -3'
miRNA:   3'- cUCGUGUAG-CGCUGCg--ACUU----UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 44884 0.67 0.795705
Target:  5'- cGAGCGCGagcgacgcuUCgGCG-CGCUGAGcuccuGCUGuGCg -3'
miRNA:   3'- -CUCGUGU---------AG-CGCuGCGACUU-----UGAC-CG- -5'
24870 5' -52.7 NC_005284.1 + 9928 0.67 0.795705
Target:  5'- -cGCGCAgcaGCGGCGUacggcgcuUGAGGC-GGCa -3'
miRNA:   3'- cuCGUGUag-CGCUGCG--------ACUUUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.