Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 14896 | 0.66 | 0.824666 |
Target: 5'- cAGCGCAaaCGCGA-GCcgUGAGACgugGGCg -3' miRNA: 3'- cUCGUGUa-GCGCUgCG--ACUUUGa--CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 9585 | 0.66 | 0.824666 |
Target: 5'- aAGCGCAggGCGaucGCGCUGccGCggcGGCg -3' miRNA: 3'- cUCGUGUagCGC---UGCGACuuUGa--CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 30264 | 0.66 | 0.833909 |
Target: 5'- cGGGCGCGuUCGUu-CGCUGucGAgUGGCu -3' miRNA: 3'- -CUCGUGU-AGCGcuGCGACu-UUgACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 17684 | 0.66 | 0.824666 |
Target: 5'- -cGCGCGaucgugCGCGACGCccUGAAucucGCcGGCg -3' miRNA: 3'- cuCGUGUa-----GCGCUGCG--ACUU----UGaCCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 35582 | 0.66 | 0.833909 |
Target: 5'- cAGUACcucGUCGCGcUGCgGAGACUcaGGCa -3' miRNA: 3'- cUCGUG---UAGCGCuGCGaCUUUGA--CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 38800 | 0.66 | 0.842931 |
Target: 5'- uGGCGC-UCGaUGGCGUcuUGGAGCUuGGCc -3' miRNA: 3'- cUCGUGuAGC-GCUGCG--ACUUUGA-CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 23048 | 0.66 | 0.851719 |
Target: 5'- aGAGCGCuAUCGCuGGCuGCgGGAGCgagcaUGGUa -3' miRNA: 3'- -CUCGUG-UAGCG-CUG-CGaCUUUG-----ACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 916 | 0.66 | 0.851719 |
Target: 5'- -cGcCGCAUCcCGGcCGCUGugcucgaugcuGAACUGGCg -3' miRNA: 3'- cuC-GUGUAGcGCU-GCGAC-----------UUUGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 33635 | 0.66 | 0.842931 |
Target: 5'- cGAGcCGCG-CGCGgcauucaucACGCgUGAAgcGCUGGCc -3' miRNA: 3'- -CUC-GUGUaGCGC---------UGCG-ACUU--UGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 965 | 0.66 | 0.824666 |
Target: 5'- -uGUACGccggCGCGACGaCUGAAaaGCaGGCc -3' miRNA: 3'- cuCGUGUa---GCGCUGC-GACUU--UGaCCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 45103 | 0.66 | 0.805553 |
Target: 5'- cGAGCGCcgUugacugcuGCGACGCUGcgaucgucGAGCUgaugGGCa -3' miRNA: 3'- -CUCGUGuaG--------CGCUGCGAC--------UUUGA----CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 23161 | 0.66 | 0.805553 |
Target: 5'- gGGGCACcgaucGUCGCGGCGCguuccgcucgugUGA---UGGCu -3' miRNA: 3'- -CUCGUG-----UAGCGCUGCG------------ACUuugACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 29845 | 0.66 | 0.824666 |
Target: 5'- gGAGCGCAugaUCgGCGACGgaGGGAuCUGcGUc -3' miRNA: 3'- -CUCGUGU---AG-CGCUGCgaCUUU-GAC-CG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 48320 | 0.66 | 0.805553 |
Target: 5'- cGAGCGCuAUCcggaaggcgGCGGCGagaUGAuucucgcGCUGGCa -3' miRNA: 3'- -CUCGUG-UAG---------CGCUGCg--ACUu------UGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 47707 | 0.66 | 0.805553 |
Target: 5'- aGGGCACGcgcgcUCGCGuGCGCaGAAggccguGCUcGGCg -3' miRNA: 3'- -CUCGUGU-----AGCGC-UGCGaCUU------UGA-CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 51729 | 0.67 | 0.795705 |
Target: 5'- aAGCGCGuguacggaaagaUCGCGGCGCgccugcgGGAAgUGGa -3' miRNA: 3'- cUCGUGU------------AGCGCUGCGa------CUUUgACCg -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 4325 | 0.67 | 0.795705 |
Target: 5'- aAGCGCAUCgGUGACGaagUGAAauccGCcGGCg -3' miRNA: 3'- cUCGUGUAG-CGCUGCg--ACUU----UGaCCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 28370 | 0.67 | 0.785678 |
Target: 5'- uGAGCACGUaGCGACGaggcuuuGCgGGCa -3' miRNA: 3'- -CUCGUGUAgCGCUGCgacuu--UGaCCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 8887 | 0.67 | 0.785678 |
Target: 5'- -uGCGCAUCGCG-CGC-GAcACacGGCa -3' miRNA: 3'- cuCGUGUAGCGCuGCGaCUuUGa-CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 9928 | 0.67 | 0.795705 |
Target: 5'- -cGCGCAgcaGCGGCGUacggcgcuUGAGGC-GGCa -3' miRNA: 3'- cuCGUGUag-CGCUGCG--------ACUUUGaCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home