Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 53320 | 0.73 | 0.419335 |
Target: 5'- aAGCGCGcagacuuaaUCGC-ACGCUGcuGCUGGCu -3' miRNA: 3'- cUCGUGU---------AGCGcUGCGACuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 51729 | 0.67 | 0.795705 |
Target: 5'- aAGCGCGuguacggaaagaUCGCGGCGCgccugcgGGAAgUGGa -3' miRNA: 3'- cUCGUGU------------AGCGCUGCGa------CUUUgACCg -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 51510 | 0.69 | 0.689363 |
Target: 5'- gGGGaCACG-CGgGACGCUGA---UGGCg -3' miRNA: 3'- -CUC-GUGUaGCgCUGCGACUuugACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 50249 | 0.69 | 0.667013 |
Target: 5'- -cGCGaacgGCGACGCUGAAGCgucagaaGGCg -3' miRNA: 3'- cuCGUguagCGCUGCGACUUUGa------CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 48320 | 0.66 | 0.805553 |
Target: 5'- cGAGCGCuAUCcggaaggcgGCGGCGagaUGAuucucgcGCUGGCa -3' miRNA: 3'- -CUCGUG-UAG---------CGCUGCg--ACUu------UGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 48154 | 0.68 | 0.711482 |
Target: 5'- aGAGCcCAUUcCGGCGCgc--GCUGGCg -3' miRNA: 3'- -CUCGuGUAGcGCUGCGacuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 47809 | 0.73 | 0.429071 |
Target: 5'- cGAGCGCuUgGCGGCGCUGcGAUgGGUg -3' miRNA: 3'- -CUCGUGuAgCGCUGCGACuUUGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 47707 | 0.66 | 0.805553 |
Target: 5'- aGGGCACGcgcgcUCGCGuGCGCaGAAggccguGCUcGGCg -3' miRNA: 3'- -CUCGUGU-----AGCGC-UGCGaCUU------UGA-CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 45103 | 0.66 | 0.805553 |
Target: 5'- cGAGCGCcgUugacugcuGCGACGCUGcgaucgucGAGCUgaugGGCa -3' miRNA: 3'- -CUCGUGuaG--------CGCUGCGAC--------UUUGA----CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 44884 | 0.67 | 0.795705 |
Target: 5'- cGAGCGCGagcgacgcuUCgGCG-CGCUGAGcuccuGCUGuGCg -3' miRNA: 3'- -CUCGUGU---------AG-CGCuGCGACUU-----UGAC-CG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 39334 | 0.67 | 0.754641 |
Target: 5'- -cGCACgAUCGCGuagcagucgugcACGCcaugGAcgAACUGGCg -3' miRNA: 3'- cuCGUG-UAGCGC------------UGCGa---CU--UUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 39071 | 0.67 | 0.775484 |
Target: 5'- -cGCGCGUCGacaGACGCccgUGcAugUGGUg -3' miRNA: 3'- cuCGUGUAGCg--CUGCG---ACuUugACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 38949 | 0.74 | 0.39373 |
Target: 5'- cGAGCACuucgucgaccuucGUgCGCGAUGCUGAuccgcgggcugcgcGCUGGCg -3' miRNA: 3'- -CUCGUG-------------UA-GCGCUGCGACUu-------------UGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 38800 | 0.66 | 0.842931 |
Target: 5'- uGGCGC-UCGaUGGCGUcuUGGAGCUuGGCc -3' miRNA: 3'- cUCGUGuAGC-GCUGCG--ACUUUGA-CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 35582 | 0.66 | 0.833909 |
Target: 5'- cAGUACcucGUCGCGcUGCgGAGACUcaGGCa -3' miRNA: 3'- cUCGUG---UAGCGCuGCGaCUUUGA--CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 33961 | 0.67 | 0.795705 |
Target: 5'- -cGCuCGUCGgcCGGCGCUGcuGCgGGCu -3' miRNA: 3'- cuCGuGUAGC--GCUGCGACuuUGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 33635 | 0.66 | 0.842931 |
Target: 5'- cGAGcCGCG-CGCGgcauucaucACGCgUGAAgcGCUGGCc -3' miRNA: 3'- -CUC-GUGUaGCGC---------UGCG-ACUU--UGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 32943 | 0.7 | 0.57711 |
Target: 5'- cGGCAcCAUCgcccacgccgGCGGCGCUGgAAGCgccgGGCa -3' miRNA: 3'- cUCGU-GUAG----------CGCUGCGAC-UUUGa---CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 30866 | 0.68 | 0.700458 |
Target: 5'- cGGCACAUCuGCGGCaGCgc--ACUGGUc -3' miRNA: 3'- cUCGUGUAG-CGCUG-CGacuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 30264 | 0.66 | 0.833909 |
Target: 5'- cGGGCGCGuUCGUu-CGCUGucGAgUGGCu -3' miRNA: 3'- -CUCGUGU-AGCGcuGCGACu-UUgACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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