miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24903 5' -56.7 NC_005284.1 + 51497 0.66 0.621175
Target:  5'- cACCACGgcAGCACacu-GUGCcCGCACUu -3'
miRNA:   3'- aUGGUGC--UCGUGcuauCGCG-GCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 37572 0.66 0.610142
Target:  5'- cACgGCGAGCAgGGUGaUGCUGCugUc -3'
miRNA:   3'- aUGgUGCUCGUgCUAUcGCGGCGugA- -5'
24903 5' -56.7 NC_005284.1 + 22865 0.66 0.610142
Target:  5'- gGCgGCGGGaaggGCGucgAGCGCCGCgaGCUg -3'
miRNA:   3'- aUGgUGCUCg---UGCua-UCGCGGCG--UGA- -5'
24903 5' -56.7 NC_005284.1 + 21607 0.66 0.610142
Target:  5'- aGCguUGGGCAaGAUcucgcGCGCCGCGCUc -3'
miRNA:   3'- aUGguGCUCGUgCUAu----CGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 21558 0.66 0.610142
Target:  5'- uUGCCgACGAGCaggccGCGcgGGCGUucgaCGCGCa -3'
miRNA:   3'- -AUGG-UGCUCG-----UGCuaUCGCG----GCGUGa -5'
24903 5' -56.7 NC_005284.1 + 27167 0.66 0.599128
Target:  5'- uUGCU-CGAGUAUGG-GGCGCCGCuACg -3'
miRNA:   3'- -AUGGuGCUCGUGCUaUCGCGGCG-UGa -5'
24903 5' -56.7 NC_005284.1 + 451 0.66 0.599128
Target:  5'- gACCcgGCGAGC-CGGcAGCGCCuggucgGCGCa -3'
miRNA:   3'- aUGG--UGCUCGuGCUaUCGCGG------CGUGa -5'
24903 5' -56.7 NC_005284.1 + 37081 0.66 0.599128
Target:  5'- cGCCAuCGAcGCgccgGCGAgauucagGGCGUCGCGCa -3'
miRNA:   3'- aUGGU-GCU-CG----UGCUa------UCGCGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 27459 0.66 0.599128
Target:  5'- -gUCAgGGGCGCGAUAGuUGgUGCACa -3'
miRNA:   3'- auGGUgCUCGUGCUAUC-GCgGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 31427 0.66 0.577195
Target:  5'- -uUCGCGGGCgACGu--GCGCCGCuGCg -3'
miRNA:   3'- auGGUGCUCG-UGCuauCGCGGCG-UGa -5'
24903 5' -56.7 NC_005284.1 + 9990 0.66 0.577195
Target:  5'- cUGCUgcGCGAGCGCGAgcGaCGCuucggCGCGCUg -3'
miRNA:   3'- -AUGG--UGCUCGUGCUauC-GCG-----GCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 12897 0.66 0.577195
Target:  5'- -uCCGCGGGCGCGA-AGCgGCgGCGu- -3'
miRNA:   3'- auGGUGCUCGUGCUaUCG-CGgCGUga -5'
24903 5' -56.7 NC_005284.1 + 51513 0.66 0.577195
Target:  5'- gACaCGCGGGaCGCuGAUGGCGUgaaGCGCUa -3'
miRNA:   3'- aUG-GUGCUC-GUG-CUAUCGCGg--CGUGA- -5'
24903 5' -56.7 NC_005284.1 + 37383 0.67 0.566292
Target:  5'- cGCCGCGGucGuCGCcGUAGCGuuGCACc -3'
miRNA:   3'- aUGGUGCU--C-GUGcUAUCGCggCGUGa -5'
24903 5' -56.7 NC_005284.1 + 10128 0.67 0.566292
Target:  5'- cGCgGCGAcgGCGCaGAcGGCGCuCGCGCg -3'
miRNA:   3'- aUGgUGCU--CGUG-CUaUCGCG-GCGUGa -5'
24903 5' -56.7 NC_005284.1 + 9358 0.67 0.566292
Target:  5'- aGCgACGGGCGCGAgcGCGaggcuUGCGCa -3'
miRNA:   3'- aUGgUGCUCGUGCUauCGCg----GCGUGa -5'
24903 5' -56.7 NC_005284.1 + 15264 0.67 0.555443
Target:  5'- --aCGCGAGCGCGAacUGGUcggucggcacgGCCGCAa- -3'
miRNA:   3'- augGUGCUCGUGCU--AUCG-----------CGGCGUga -5'
24903 5' -56.7 NC_005284.1 + 21762 0.67 0.555443
Target:  5'- uUGCCGCuGGCACug-AGCGgCUGCGCg -3'
miRNA:   3'- -AUGGUGcUCGUGcuaUCGC-GGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 16115 0.67 0.544656
Target:  5'- uUGCCGuuGGCGCGGUGGCGacguucgguuUCGCGCa -3'
miRNA:   3'- -AUGGUgcUCGUGCUAUCGC----------GGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 33874 0.67 0.543581
Target:  5'- gAUUACGAacgGCGCGAUcgacuacgaagucGGCGCCgGCGCa -3'
miRNA:   3'- aUGGUGCU---CGUGCUA-------------UCGCGG-CGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.