miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 3' -49.9 NC_005284.1 + 46176 0.66 0.955973
Target:  5'- aCGAAACggaaGGCgaacUCGcCGAACG-CGCAGc -3'
miRNA:   3'- -GCUUUGg---CCGa---AGU-GCUUGUuGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 52519 0.66 0.955973
Target:  5'- aGAAACCgcccaaugucGGCUUCACGAuuuuCGAaaCAGa -3'
miRNA:   3'- gCUUUGG----------CCGAAGUGCUu---GUUgcGUC- -5'
24905 3' -49.9 NC_005284.1 + 21551 0.66 0.955973
Target:  5'- ---cAUCGGCUUgccgACGAGCAggccGCGCGGg -3'
miRNA:   3'- gcuuUGGCCGAAg---UGCUUGU----UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 9426 0.66 0.955973
Target:  5'- uGAAACuCGGCgugUCGCucGCGGCcggGCGGa -3'
miRNA:   3'- gCUUUG-GCCGa--AGUGcuUGUUG---CGUC- -5'
24905 3' -49.9 NC_005284.1 + 17720 0.66 0.955973
Target:  5'- aCGGcguUCGGCUgCACGucGCAgGCGCAGg -3'
miRNA:   3'- -GCUuu-GGCCGAaGUGCu-UGU-UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 3844 0.66 0.95158
Target:  5'- uGAGGCCGGCc-CAUGAuccgauCGGCGUAu -3'
miRNA:   3'- gCUUUGGCCGaaGUGCUu-----GUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 45023 0.66 0.95158
Target:  5'- cCGAAGCaCGGCgg-GCGAuACAccgagGCGCGGu -3'
miRNA:   3'- -GCUUUG-GCCGaagUGCU-UGU-----UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 16228 0.66 0.946904
Target:  5'- -cAGGCCGGCcUCgcggggacgGCGAACAACgGCAc -3'
miRNA:   3'- gcUUUGGCCGaAG---------UGCUUGUUG-CGUc -5'
24905 3' -49.9 NC_005284.1 + 34030 0.66 0.946904
Target:  5'- ---cGCCGGCcgacgaGCGGGCGGCGCu- -3'
miRNA:   3'- gcuuUGGCCGaag---UGCUUGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 16685 0.66 0.946904
Target:  5'- uGAGGCCGGCgUCggcgugccgcugACGucCGACGCGc -3'
miRNA:   3'- gCUUUGGCCGaAG------------UGCuuGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 38980 0.66 0.946904
Target:  5'- uGAuccGCgGGCUgCGCGcuGGCGACGCAa -3'
miRNA:   3'- gCUu--UGgCCGAaGUGC--UUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 50655 0.66 0.941938
Target:  5'- aGuguGCCGaGaCaUCGCGGACGugGCGGa -3'
miRNA:   3'- gCuu-UGGC-C-GaAGUGCUUGUugCGUC- -5'
24905 3' -49.9 NC_005284.1 + 6701 0.66 0.941938
Target:  5'- aCGAAggGCaaGGCUgauUCGcCGAACAACGCGu -3'
miRNA:   3'- -GCUU--UGg-CCGA---AGU-GCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 40196 0.66 0.941938
Target:  5'- gCGAAGCCGGaagUCGCGGcaGugGCc- -3'
miRNA:   3'- -GCUUUGGCCga-AGUGCUugUugCGuc -5'
24905 3' -49.9 NC_005284.1 + 44402 0.66 0.936681
Target:  5'- gCGAuuUCGaGUgcCGCGGGCAugGCAGu -3'
miRNA:   3'- -GCUuuGGC-CGaaGUGCUUGUugCGUC- -5'
24905 3' -49.9 NC_005284.1 + 14055 0.67 0.93113
Target:  5'- gCGGcaGGCUGGCgucaUCGCGAACGAgUGguGg -3'
miRNA:   3'- -GCU--UUGGCCGa---AGUGCUUGUU-GCguC- -5'
24905 3' -49.9 NC_005284.1 + 47639 0.67 0.93113
Target:  5'- gCGAAGCUGucGCccgACGAGCAACGCGc -3'
miRNA:   3'- -GCUUUGGC--CGaagUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 5764 0.67 0.925283
Target:  5'- gCGAAuCCGGCgggucaaccUCGCGAAUAAggccguucacuCGCAGu -3'
miRNA:   3'- -GCUUuGGCCGa--------AGUGCUUGUU-----------GCGUC- -5'
24905 3' -49.9 NC_005284.1 + 54865 0.67 0.925283
Target:  5'- -GAAGCgGGCggUCcCGAagGCAGCGCc- -3'
miRNA:   3'- gCUUUGgCCGa-AGuGCU--UGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 35971 0.67 0.925283
Target:  5'- uGAuGCUcGCUUCGCGAACAAUcaGCGu -3'
miRNA:   3'- gCUuUGGcCGAAGUGCUUGUUG--CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.