miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 5' -57.2 NC_005284.1 + 54742 0.7 0.386014
Target:  5'- gGCGGAUG-CGCCGGGuggGgAGGgGGg -3'
miRNA:   3'- gCGCUUGCuGCGGCUCua-CgUCCgCC- -5'
24907 5' -57.2 NC_005284.1 + 54679 0.72 0.335239
Target:  5'- gGCGAagACGGCGCgCGAGcgguugcggugacGUGguGGUGGc -3'
miRNA:   3'- gCGCU--UGCUGCG-GCUC-------------UACguCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 53638 0.66 0.614655
Target:  5'- aGaCGAGCGACauuGCguuaCGAcuGUGCAGGCGGc -3'
miRNA:   3'- gC-GCUUGCUG---CG----GCUc-UACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 51460 0.69 0.459834
Target:  5'- aGCuGAugGACGUCGAGcgaUGGGCGGu -3'
miRNA:   3'- gCG-CUugCUGCGGCUCuacGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 51396 0.67 0.582625
Target:  5'- aGCGGGCucGACGCgGcGGAagUGCGGGCa- -3'
miRNA:   3'- gCGCUUG--CUGCGgC-UCU--ACGUCCGcc -5'
24907 5' -57.2 NC_005284.1 + 50248 0.66 0.657519
Target:  5'- aCGCGAacgGCGACGCUGAagcGUcagaAGGCGa -3'
miRNA:   3'- -GCGCU---UGCUGCGGCUcuaCG----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 49173 0.67 0.561454
Target:  5'- uCGCGcugcuCGAUGCCGAGuUGCuuaccGCGGu -3'
miRNA:   3'- -GCGCuu---GCUGCGGCUCuACGuc---CGCC- -5'
24907 5' -57.2 NC_005284.1 + 48499 0.68 0.530119
Target:  5'- uCGUGAGCGA-GUCGAaggGCGGGCGu -3'
miRNA:   3'- -GCGCUUGCUgCGGCUcuaCGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 47852 0.67 0.582625
Target:  5'- cCGCGAGCGcCGCCucGAucUGCuuacGCGGa -3'
miRNA:   3'- -GCGCUUGCuGCGGcuCU--ACGuc--CGCC- -5'
24907 5' -57.2 NC_005284.1 + 47307 0.7 0.419189
Target:  5'- aCGCGcGCGA-GCUGAaccgucaacugaucGAUGCGGGCGa -3'
miRNA:   3'- -GCGCuUGCUgCGGCU--------------CUACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 46771 0.67 0.608231
Target:  5'- aCGgGAACGGucacgggauggugcuUGCCGg---GCAGGCGGc -3'
miRNA:   3'- -GCgCUUGCU---------------GCGGCucuaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 46602 0.72 0.305423
Target:  5'- aCGcCGAACGuC-CCGAGcgGCGGGCGu -3'
miRNA:   3'- -GC-GCUUGCuGcGGCUCuaCGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 45652 0.69 0.469584
Target:  5'- gGCGu-CGAUaGCCGAGugcGCGGGCGa -3'
miRNA:   3'- gCGCuuGCUG-CGGCUCua-CGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 45430 0.66 0.657519
Target:  5'- gGCGAcgauauucGCGGCGUCGcGAUuGuCGGGCGa -3'
miRNA:   3'- gCGCU--------UGCUGCGGCuCUA-C-GUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 45014 0.69 0.459834
Target:  5'- gGCGGGCGAUacaCCGAGgcGCGGuGCGa -3'
miRNA:   3'- gCGCUUGCUGc--GGCUCuaCGUC-CGCc -5'
24907 5' -57.2 NC_005284.1 + 44524 0.68 0.519812
Target:  5'- uGCGaAGCGGCGUCGAGAU-CAcGCGa -3'
miRNA:   3'- gCGC-UUGCUGCGGCUCUAcGUcCGCc -5'
24907 5' -57.2 NC_005284.1 + 42892 0.71 0.368818
Target:  5'- uCGaUGGACGAUGCCGAGAgGC-GGCa- -3'
miRNA:   3'- -GC-GCUUGCUGCGGCUCUaCGuCCGcc -5'
24907 5' -57.2 NC_005284.1 + 38095 0.68 0.549898
Target:  5'- gCGCGGACGAagaCG-CGAGGucagaguaccuacUGgAGGCGGa -3'
miRNA:   3'- -GCGCUUGCU---GCgGCUCU-------------ACgUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 34522 0.67 0.561454
Target:  5'- uCGUG-GCGAUGCCGu--UGCGGGUGu -3'
miRNA:   3'- -GCGCuUGCUGCGGCucuACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 34039 0.66 0.614655
Target:  5'- cCGC-AGCaGCGCCGGccgacGA-GCGGGCGGc -3'
miRNA:   3'- -GCGcUUGcUGCGGCU-----CUaCGUCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.