miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 54508 0.72 0.447725
Target:  5'- gUGGGAcaagaucagGCAGCGCAUCuugcgccgcGACAgCGGCCu -3'
miRNA:   3'- gGCUCUa--------CGUCGCGUAG---------UUGU-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 53998 0.66 0.817395
Target:  5'- cUCGaAGAUGaAGCGC-UCuacGCGCaGGCCa -3'
miRNA:   3'- -GGC-UCUACgUCGCGuAGu--UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 53845 0.67 0.747848
Target:  5'- aCGGGGUGaucgcccgcCAGUucaGCAUCGAgcacaGCGGCCg -3'
miRNA:   3'- gGCUCUAC---------GUCG---CGUAGUUg----UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 51330 0.67 0.755129
Target:  5'- uCCGAGGaaCAGCGCAaauggcucgggcaaUUGACcggauCGGCCg -3'
miRNA:   3'- -GGCUCUacGUCGCGU--------------AGUUGu----GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 51229 0.68 0.661489
Target:  5'- aCGGGGUGCcccaguacaccAGCcaGUugAUCAGCACGGUCc -3'
miRNA:   3'- gGCUCUACG-----------UCG--CG--UAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 50796 0.68 0.672497
Target:  5'- cCCGAaAUGCAccgaucGCGCAUCccggaguGCgAUGGCCg -3'
miRNA:   3'- -GGCUcUACGU------CGCGUAGu------UG-UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 50103 0.67 0.758231
Target:  5'- aUCGAGAacguaacGCGGCG-AUCGcgcACGCGGCg -3'
miRNA:   3'- -GGCUCUa------CGUCGCgUAGU---UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 49312 0.71 0.540763
Target:  5'- cCCGAGGguaCGGCGaugGUUGGCACGGCa -3'
miRNA:   3'- -GGCUCUac-GUCGCg--UAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 49274 0.68 0.661489
Target:  5'- gCGAcGUGacgaAGCGCG-CuuCACGGCCg -3'
miRNA:   3'- gGCUcUACg---UCGCGUaGuuGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 48985 0.7 0.595221
Target:  5'- cUCGAG--GCGGCGCAgCGACACcuucGCCg -3'
miRNA:   3'- -GGCUCuaCGUCGCGUaGUUGUGc---CGG- -5'
24919 3' -53.8 NC_005284.1 + 48968 0.68 0.705247
Target:  5'- aUCGAcGAaGCGGUGCu---GCGCGGCUg -3'
miRNA:   3'- -GGCU-CUaCGUCGCGuaguUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 48149 0.66 0.807963
Target:  5'- aCCGGGc--CGGCGCGUaaugcgCAGCGCaccGGCCu -3'
miRNA:   3'- -GGCUCuacGUCGCGUA------GUUGUG---CCGG- -5'
24919 3' -53.8 NC_005284.1 + 48063 0.66 0.778594
Target:  5'- gCCGG--UGCGcuGCGCAUUAcGCGcCGGCCc -3'
miRNA:   3'- -GGCUcuACGU--CGCGUAGU-UGU-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 47976 0.69 0.628341
Target:  5'- gCGGGAacUGCucGCGCAU-AGCGCGGUUg -3'
miRNA:   3'- gGCUCU--ACGu-CGCGUAgUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 47545 0.66 0.788552
Target:  5'- gUCGAGcAUGCgAGC-CAUCuuCuCGGCCc -3'
miRNA:   3'- -GGCUC-UACG-UCGcGUAGuuGuGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 47465 0.7 0.573284
Target:  5'- gCCGAGAagaugGCu-CGCAugcUCGACGuCGGCCa -3'
miRNA:   3'- -GGCUCUa----CGucGCGU---AGUUGU-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 46577 0.71 0.495314
Target:  5'- gCCGAGcaugGCGGCGCAgugggCAACgccgaacgucccgaGCGGCg -3'
miRNA:   3'- -GGCUCua--CGUCGCGUa----GUUG--------------UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 46521 0.71 0.494277
Target:  5'- aCG-GAUGguGCGaagggagguccgaAUCAGCACGGCa -3'
miRNA:   3'- gGCuCUACguCGCg------------UAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 46243 0.69 0.650453
Target:  5'- gUGGGAUGCGGaauggaCGCAUCuACGCGcGUCc -3'
miRNA:   3'- gGCUCUACGUC------GCGUAGuUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 45789 0.68 0.716034
Target:  5'- gCCGcgaAGAUGUacAGcCGUGUCGacGCGCGGUCg -3'
miRNA:   3'- -GGC---UCUACG--UC-GCGUAGU--UGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.