Results 1 - 20 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24925 | 3' | -57.9 | NC_005284.1 | + | 6664 | 0.66 | 0.574237 |
Target: 5'- cGCGCCGgGUUugGCgaCGGcCGgCGUACGg -3' miRNA: 3'- -CGCGGCgUAGugCG--GCUuGC-GCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 25540 | 0.66 | 0.552998 |
Target: 5'- cGUGCgCGCGUCGCuCUauuuuGAGCGUGCAUu -3' miRNA: 3'- -CGCG-GCGUAGUGcGG-----CUUGCGCGUGu -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 17077 | 0.66 | 0.584929 |
Target: 5'- cGCGUCgGCgAUCGuCGCCGuguGCGCGUucgGCGu -3' miRNA: 3'- -CGCGG-CG-UAGU-GCGGCu--UGCGCG---UGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 12739 | 0.66 | 0.595659 |
Target: 5'- -aGCCGU----CGCCGAACugggcuuuGCGCACAc -3' miRNA: 3'- cgCGGCGuaguGCGGCUUG--------CGCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 47288 | 0.66 | 0.574237 |
Target: 5'- -gGCCGUcgC-CGCgUGAucaACGCGCGCGa -3' miRNA: 3'- cgCGGCGuaGuGCG-GCU---UGCGCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 11810 | 0.66 | 0.563591 |
Target: 5'- gGCGgaGCAggUCGCGCgCGAGCGCGg--- -3' miRNA: 3'- -CGCggCGU--AGUGCG-GCUUGCGCgugu -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 16165 | 0.66 | 0.580647 |
Target: 5'- uCGCUGauggggcucggCGCGUCGAugGCGCugGg -3' miRNA: 3'- cGCGGCgua--------GUGCGGCUugCGCGugU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 12039 | 0.66 | 0.584929 |
Target: 5'- uCGCCGaCcUCGCGCgGuuuucGGCGCGUGCGg -3' miRNA: 3'- cGCGGC-GuAGUGCGgC-----UUGCGCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 22918 | 0.66 | 0.574237 |
Target: 5'- uGCGgCGCAgccagUCGgGCUGuucugaucgauuGGCGCGCGCGu -3' miRNA: 3'- -CGCgGCGU-----AGUgCGGC------------UUGCGCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 15559 | 0.66 | 0.584929 |
Target: 5'- aCGCCGCG-CuCGgCGAGauaccaguCGCGCACGa -3' miRNA: 3'- cGCGGCGUaGuGCgGCUU--------GCGCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 49226 | 0.66 | 0.595659 |
Target: 5'- cGgGCC-CGUC-CGCCuugacGACGCGCGCc -3' miRNA: 3'- -CgCGGcGUAGuGCGGc----UUGCGCGUGu -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 22680 | 0.66 | 0.591363 |
Target: 5'- -aGCCGCucgauguacgcauUCGCGagaCGAAUGUGCGCc -3' miRNA: 3'- cgCGGCGu------------AGUGCg--GCUUGCGCGUGu -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 6937 | 0.66 | 0.574237 |
Target: 5'- cCGCCGCccuccgagcaCACGaUCGAuCGCGCGCGc -3' miRNA: 3'- cGCGGCGua--------GUGC-GGCUuGCGCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 38585 | 0.66 | 0.595659 |
Target: 5'- -gGCCGU-UCG-GCCGAGCGCaCGCGg -3' miRNA: 3'- cgCGGCGuAGUgCGGCUUGCGcGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 1620 | 0.66 | 0.595659 |
Target: 5'- uGCG-UGC-UCGCGCuCGacAugGCGCGCAa -3' miRNA: 3'- -CGCgGCGuAGUGCG-GC--UugCGCGUGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 12496 | 0.66 | 0.595659 |
Target: 5'- cGCGCUGaccgagAUCcCGCCGuuGCGCGCcgGCGa -3' miRNA: 3'- -CGCGGCg-----UAGuGCGGCu-UGCGCG--UGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 22871 | 0.66 | 0.59996 |
Target: 5'- cGCGCCGgAUCuccggauggucguugAgGCUGAcgauCGCGCGCc -3' miRNA: 3'- -CGCGGCgUAG---------------UgCGGCUu---GCGCGUGu -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 47454 | 0.66 | 0.584929 |
Target: 5'- uUGUCGCuGUCGCGCauGACGCGCu-- -3' miRNA: 3'- cGCGGCG-UAGUGCGgcUUGCGCGugu -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 16259 | 0.66 | 0.574237 |
Target: 5'- aUGCCGCccaGCGCCaucGACGCGC-CGa -3' miRNA: 3'- cGCGGCGuagUGCGGc--UUGCGCGuGU- -5' |
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24925 | 3' | -57.9 | NC_005284.1 | + | 18266 | 0.66 | 0.595659 |
Target: 5'- uGCaGCCGCcgC-CGUCGAACGUcCGCc -3' miRNA: 3'- -CG-CGGCGuaGuGCGGCUUGCGcGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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