miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 3' -57.9 NC_005284.1 + 1188 0.72 0.279621
Target:  5'- aGCGCCGCAcugUACGaaaCGAugcugaccggcauggGCGCGCGCc -3'
miRNA:   3'- -CGCGGCGUa--GUGCg--GCU---------------UGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 1620 0.66 0.595659
Target:  5'- uGCG-UGC-UCGCGCuCGacAugGCGCGCAa -3'
miRNA:   3'- -CGCgGCGuAGUGCG-GC--UugCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 1718 0.7 0.369352
Target:  5'- uGCGCCGCGauUCugGgugcCCGAAgaaacUGUGCGCAa -3'
miRNA:   3'- -CGCGGCGU--AGugC----GGCUU-----GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 4715 0.67 0.529915
Target:  5'- uGCuGCCGC-UCACGCCGcugccgaccguCGCagGCACGu -3'
miRNA:   3'- -CG-CGGCGuAGUGCGGCuu---------GCG--CGUGU- -5'
24925 3' -57.9 NC_005284.1 + 4801 0.72 0.283806
Target:  5'- cGCaGCgGCAgua-GCCGAAgGCGCACAg -3'
miRNA:   3'- -CG-CGgCGUagugCGGCUUgCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 6413 0.68 0.4514
Target:  5'- cUGUCGaCAUCGCGgcgaaaUCGAAUGCGCAUAc -3'
miRNA:   3'- cGCGGC-GUAGUGC------GGCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 6664 0.66 0.574237
Target:  5'- cGCGCCGgGUUugGCgaCGGcCGgCGUACGg -3'
miRNA:   3'- -CGCGGCgUAGugCG--GCUuGC-GCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 6937 0.66 0.574237
Target:  5'- cCGCCGCccuccgagcaCACGaUCGAuCGCGCGCGc -3'
miRNA:   3'- cGCGGCGua--------GUGC-GGCUuGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 6966 0.74 0.193399
Target:  5'- gGCGCCGUAUUuCGUCGugacCGCGUACAu -3'
miRNA:   3'- -CGCGGCGUAGuGCGGCuu--GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 7073 0.68 0.4514
Target:  5'- gGCGa-GCGcCAUGUCGAGCGCGC-CAu -3'
miRNA:   3'- -CGCggCGUaGUGCGGCUUGCGCGuGU- -5'
24925 3' -57.9 NC_005284.1 + 8082 0.7 0.352557
Target:  5'- uCGCCuGCAUgugCGCGUCGucacucGCGCGCGCGa -3'
miRNA:   3'- cGCGG-CGUA---GUGCGGCu-----UGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 8248 0.68 0.447542
Target:  5'- cGCGCUGCGgcucggcaagacgUugGCCGAGCuGUGCgaGCAg -3'
miRNA:   3'- -CGCGGCGUa------------GugCGGCUUG-CGCG--UGU- -5'
24925 3' -57.9 NC_005284.1 + 8441 0.69 0.422924
Target:  5'- cCGCCGCgAUCAuCGCCGcAUGCagauccGCACGa -3'
miRNA:   3'- cGCGGCG-UAGU-GCGGCuUGCG------CGUGU- -5'
24925 3' -57.9 NC_005284.1 + 8689 0.68 0.470956
Target:  5'- aCGCCGCAagcgugcaggUCACGgU--GCGCGCGCu -3'
miRNA:   3'- cGCGGCGU----------AGUGCgGcuUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 8733 0.73 0.220342
Target:  5'- aCGCCGCAUCcgcugugcgccCGCCGu-CGCGCACc -3'
miRNA:   3'- cGCGGCGUAGu----------GCGGCuuGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 8790 0.77 0.129236
Target:  5'- uGCG-CGC--CGCGUCGAGCGCGCGCAc -3'
miRNA:   3'- -CGCgGCGuaGUGCGGCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 8983 0.7 0.33631
Target:  5'- gGCuGUCGCGUCGagcgguUGCCGugguCGCGCGCGa -3'
miRNA:   3'- -CG-CGGCGUAGU------GCGGCuu--GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 9134 0.67 0.532
Target:  5'- uUGCCGgGUguCGCgGAugcuauCGCGCGCGg -3'
miRNA:   3'- cGCGGCgUAguGCGgCUu-----GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 9238 0.67 0.521608
Target:  5'- gGCGCUGaCGcgCGCGgCGGGCG-GCACGg -3'
miRNA:   3'- -CGCGGC-GUa-GUGCgGCUUGCgCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 9240 0.67 0.509244
Target:  5'- uGCGCCGaacucuugccCAUGCCGcGCGCGauaGCAu -3'
miRNA:   3'- -CGCGGCgua-------GUGCGGCuUGCGCg--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.