miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 3' -57.9 NC_005284.1 + 16977 1.1 0.000524
Target:  5'- uGCGCCGCAUCACGCCGAACGCGCACAc -3'
miRNA:   3'- -CGCGGCGUAGUGCGGCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 12281 0.86 0.026392
Target:  5'- cGCGCCGCAguggugUCGCaGCCGGGCGUGCGCGc -3'
miRNA:   3'- -CGCGGCGU------AGUG-CGGCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 21626 0.84 0.040689
Target:  5'- cGCGCCGCGcUCgACGCCGAGCaGCGUGCGa -3'
miRNA:   3'- -CGCGGCGU-AG-UGCGGCUUG-CGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 38729 0.83 0.04564
Target:  5'- uGCGCUGCAUgGCGCCGGACG-GCAUg -3'
miRNA:   3'- -CGCGGCGUAgUGCGGCUUGCgCGUGu -5'
24925 3' -57.9 NC_005284.1 + 37090 0.82 0.058856
Target:  5'- cGCGCCggcgagauucaggGCGUCGCGCaCGAuCGCGCGCAg -3'
miRNA:   3'- -CGCGG-------------CGUAGUGCG-GCUuGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 47814 0.8 0.080588
Target:  5'- cGCGCCGCcgUAcCGCCGAGCacggccuucuGCGCACGc -3'
miRNA:   3'- -CGCGGCGuaGU-GCGGCUUG----------CGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 18587 0.79 0.089407
Target:  5'- aCGCCGUacgccggaaucgacGUCACGCCGAGCGCGUucuCGg -3'
miRNA:   3'- cGCGGCG--------------UAGUGCGGCUUGCGCGu--GU- -5'
24925 3' -57.9 NC_005284.1 + 12128 0.78 0.106566
Target:  5'- uCGCCGCA-CGCGCCGAAaacCGCGCGa- -3'
miRNA:   3'- cGCGGCGUaGUGCGGCUU---GCGCGUgu -5'
24925 3' -57.9 NC_005284.1 + 8790 0.77 0.129236
Target:  5'- uGCG-CGC--CGCGUCGAGCGCGCGCAc -3'
miRNA:   3'- -CGCgGCGuaGUGCGGCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 10756 0.76 0.144118
Target:  5'- cCGCCGUgucgAUCGCGCCcgcGGCGCGCACc -3'
miRNA:   3'- cGCGGCG----UAGUGCGGc--UUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 45557 0.76 0.148076
Target:  5'- cCGCCGCGUggCGCGUCGccCGCGCACu -3'
miRNA:   3'- cGCGGCGUA--GUGCGGCuuGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 11948 0.76 0.148076
Target:  5'- cGC-CCGCuUCACGCCGA-CGCGC-CAg -3'
miRNA:   3'- -CGcGGCGuAGUGCGGCUuGCGCGuGU- -5'
24925 3' -57.9 NC_005284.1 + 21294 0.75 0.156291
Target:  5'- uGCGCCcCcUCAaGCCGGGCGUGCACGu -3'
miRNA:   3'- -CGCGGcGuAGUgCGGCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 21655 0.74 0.183455
Target:  5'- aUGCCGCugCGCGUCGAACGCccGCGCGg -3'
miRNA:   3'- cGCGGCGuaGUGCGGCUUGCG--CGUGU- -5'
24925 3' -57.9 NC_005284.1 + 15920 0.74 0.188369
Target:  5'- uGCGuCCGaaacgCACGCCGAGCGUGCcguACAg -3'
miRNA:   3'- -CGC-GGCgua--GUGCGGCUUGCGCG---UGU- -5'
24925 3' -57.9 NC_005284.1 + 27609 0.74 0.193399
Target:  5'- aGCGCCGCcgAUUAUGCguagcacaaUGAACGUGCGCGa -3'
miRNA:   3'- -CGCGGCG--UAGUGCG---------GCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 6966 0.74 0.193399
Target:  5'- gGCGCCGUAUUuCGUCGugacCGCGUACAu -3'
miRNA:   3'- -CGCGGCGUAGuGCGGCuu--GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 16578 0.74 0.193399
Target:  5'- cCGCCGagAUCACGUCGAgcaccuucGCGCGUGCAa -3'
miRNA:   3'- cGCGGCg-UAGUGCGGCU--------UGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 11172 0.74 0.209199
Target:  5'- cGCGCCGCggC-CGCCGcGCGCGgaaaGCAa -3'
miRNA:   3'- -CGCGGCGuaGuGCGGCuUGCGCg---UGU- -5'
24925 3' -57.9 NC_005284.1 + 39073 0.73 0.214708
Target:  5'- cGCGCaUGCGUUGCGUCGccaGCGCGCAg -3'
miRNA:   3'- -CGCG-GCGUAGUGCGGCuugCGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.