miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 3' -57.9 NC_005284.1 + 30119 0.71 0.320616
Target:  5'- uCGCgGCuAUCACGUCGAcugcacgcCGCGCGCGa -3'
miRNA:   3'- cGCGgCG-UAGUGCGGCUu-------GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 31473 0.72 0.270046
Target:  5'- cCGCCGUG-C-CGCCGGAaaaGCGCGCAu -3'
miRNA:   3'- cGCGGCGUaGuGCGGCUUg--CGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 1188 0.72 0.279621
Target:  5'- aGCGCCGCAcugUACGaaaCGAugcugaccggcauggGCGCGCGCc -3'
miRNA:   3'- -CGCGGCGUa--GUGCg--GCU---------------UGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 4801 0.72 0.283806
Target:  5'- cGCaGCgGCAgua-GCCGAAgGCGCACAg -3'
miRNA:   3'- -CG-CGgCGUagugCGGCUUgCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 18108 0.71 0.290892
Target:  5'- gGCGCagcaGUAUCGCGUugUGAGCGUGCAgGa -3'
miRNA:   3'- -CGCGg---CGUAGUGCG--GCUUGCGCGUgU- -5'
24925 3' -57.9 NC_005284.1 + 16924 0.71 0.298115
Target:  5'- aGCGCuCGCAUCGgaucgaGCUGc-CGCGCGCAa -3'
miRNA:   3'- -CGCG-GCGUAGUg-----CGGCuuGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 37382 0.71 0.298115
Target:  5'- aCGCCGCgGUCGuCGCCGuAGCGuUGCACc -3'
miRNA:   3'- cGCGGCG-UAGU-GCGGC-UUGC-GCGUGu -5'
24925 3' -57.9 NC_005284.1 + 10407 0.71 0.305477
Target:  5'- gGCGUCGCGg-GCgGCCGAugACGCGCAg- -3'
miRNA:   3'- -CGCGGCGUagUG-CGGCU--UGCGCGUgu -5'
24925 3' -57.9 NC_005284.1 + 26345 0.71 0.312977
Target:  5'- aGCGCgGCAcggUCaACGCCG-GCGCGC-CGg -3'
miRNA:   3'- -CGCGgCGU---AG-UGCGGCuUGCGCGuGU- -5'
24925 3' -57.9 NC_005284.1 + 43522 0.72 0.256828
Target:  5'- -gGCUGCugugauUCgAUGCCGAuaGCGCGCGCAa -3'
miRNA:   3'- cgCGGCGu-----AG-UGCGGCU--UGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 34239 0.72 0.25042
Target:  5'- uGCGCCGUcgauGUCcuGCGgCGuaacuGCGCGCGCAg -3'
miRNA:   3'- -CGCGGCG----UAG--UGCgGCu----UGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 15496 0.72 0.25042
Target:  5'- aGCGCgGCGUCGCGUuacccgacuuCGAGCGCGaggACGa -3'
miRNA:   3'- -CGCGgCGUAGUGCG----------GCUUGCGCg--UGU- -5'
24925 3' -57.9 NC_005284.1 + 12281 0.86 0.026392
Target:  5'- cGCGCCGCAguggugUCGCaGCCGGGCGUGCGCGc -3'
miRNA:   3'- -CGCGGCGU------AGUG-CGGCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 21626 0.84 0.040689
Target:  5'- cGCGCCGCGcUCgACGCCGAGCaGCGUGCGa -3'
miRNA:   3'- -CGCGGCGU-AG-UGCGGCUUG-CGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 38729 0.83 0.04564
Target:  5'- uGCGCUGCAUgGCGCCGGACG-GCAUg -3'
miRNA:   3'- -CGCGGCGUAgUGCGGCUUGCgCGUGu -5'
24925 3' -57.9 NC_005284.1 + 37090 0.82 0.058856
Target:  5'- cGCGCCggcgagauucaggGCGUCGCGCaCGAuCGCGCGCAg -3'
miRNA:   3'- -CGCGG-------------CGUAGUGCG-GCUuGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 45557 0.76 0.148076
Target:  5'- cCGCCGCGUggCGCGUCGccCGCGCACu -3'
miRNA:   3'- cGCGGCGUA--GUGCGGCuuGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 6966 0.74 0.193399
Target:  5'- gGCGCCGUAUUuCGUCGugacCGCGUACAu -3'
miRNA:   3'- -CGCGGCGUAGuGCGGCuu--GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 27609 0.74 0.193399
Target:  5'- aGCGCCGCcgAUUAUGCguagcacaaUGAACGUGCGCGa -3'
miRNA:   3'- -CGCGGCG--UAGUGCG---------GCUUGCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 11172 0.74 0.209199
Target:  5'- cGCGCCGCggC-CGCCGcGCGCGgaaaGCAa -3'
miRNA:   3'- -CGCGGCGuaGuGCGGCuUGCGCg---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.