miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 5' -55.5 NC_005284.1 + 19034 0.66 0.740079
Target:  5'- gAUCGCCGAgggcgauauggcgguCGCGAagaaagUCGAaacaGUCGcGGCc -3'
miRNA:   3'- -UAGCGGCU---------------GCGCU------AGUUg---CAGCuCCG- -5'
24925 5' -55.5 NC_005284.1 + 7065 0.66 0.73591
Target:  5'- -gCGCCGACGUucacCGACGcCGAucGGCu -3'
miRNA:   3'- uaGCGGCUGCGcua-GUUGCaGCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 3670 0.66 0.734865
Target:  5'- cAUCGUCGAC-UGAcUUGACGUCGAgaucaaaGGCa -3'
miRNA:   3'- -UAGCGGCUGcGCU-AGUUGCAGCU-------CCG- -5'
24925 5' -55.5 NC_005284.1 + 33842 0.66 0.734865
Target:  5'- -gCGCCGGCGCacuUCGACagaauGUCGcgacaguAGGCa -3'
miRNA:   3'- uaGCGGCUGCGcu-AGUUG-----CAGC-------UCCG- -5'
24925 5' -55.5 NC_005284.1 + 15273 0.66 0.725416
Target:  5'- aGUCcuCCGACGCGAgcgCGAacugGUCGGucGGCa -3'
miRNA:   3'- -UAGc-GGCUGCGCUa--GUUg---CAGCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 10804 0.66 0.725416
Target:  5'- uUCGCCGGCG-GAaUGGCaUCgGAGGCg -3'
miRNA:   3'- uAGCGGCUGCgCUaGUUGcAG-CUCCG- -5'
24925 5' -55.5 NC_005284.1 + 47750 0.66 0.71483
Target:  5'- -aCGgCGGCGCGcguacGUCcGCGuaagcagaUCGAGGCg -3'
miRNA:   3'- uaGCgGCUGCGC-----UAGuUGC--------AGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 7155 0.66 0.71483
Target:  5'- --aGUCGGCaagcCGAUCGGCGUCGGugaacgucGGCg -3'
miRNA:   3'- uagCGGCUGc---GCUAGUUGCAGCU--------CCG- -5'
24925 5' -55.5 NC_005284.1 + 968 0.66 0.704164
Target:  5'- -aCGCCGGCGCGA-CGACugaaaaGcAGGCc -3'
miRNA:   3'- uaGCGGCUGCGCUaGUUGcag---C-UCCG- -5'
24925 5' -55.5 NC_005284.1 + 4105 0.66 0.704164
Target:  5'- -cCGCCGuGCGCGAugaucgauuUCAccGCGUCGAuucGCg -3'
miRNA:   3'- uaGCGGC-UGCGCU---------AGU--UGCAGCUc--CG- -5'
24925 5' -55.5 NC_005284.1 + 27480 0.66 0.704164
Target:  5'- cUCGCUGAuaccCG-GAUCuuCGUCaGGGGCg -3'
miRNA:   3'- uAGCGGCU----GCgCUAGuuGCAG-CUCCG- -5'
24925 5' -55.5 NC_005284.1 + 54417 0.66 0.704164
Target:  5'- aGUCGCac-UGCGAUCAACaugcgcaCGAGGCc -3'
miRNA:   3'- -UAGCGgcuGCGCUAGUUGca-----GCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 22744 0.66 0.704164
Target:  5'- gAUgGCCGAgcggcUGCGGUCGAUcaaGGGGCg -3'
miRNA:   3'- -UAgCGGCU-----GCGCUAGUUGcagCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 46033 0.66 0.704164
Target:  5'- uGUCGCCgGGCGuCGAgcaGGCcUCGAcGGCa -3'
miRNA:   3'- -UAGCGG-CUGC-GCUag-UUGcAGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 29861 0.66 0.704164
Target:  5'- --aGCCGACGCaucucgcgauGGUCGGCGcCGgcguguuccaAGGCg -3'
miRNA:   3'- uagCGGCUGCG----------CUAGUUGCaGC----------UCCG- -5'
24925 5' -55.5 NC_005284.1 + 11938 0.66 0.699878
Target:  5'- -aCGCCGACGCGccagucggccugCAACG-CGAGccGCu -3'
miRNA:   3'- uaGCGGCUGCGCua----------GUUGCaGCUC--CG- -5'
24925 5' -55.5 NC_005284.1 + 30475 0.66 0.693429
Target:  5'- --gGCCGGCGUGAcCAucACGUcCGAacuGGCg -3'
miRNA:   3'- uagCGGCUGCGCUaGU--UGCA-GCU---CCG- -5'
24925 5' -55.5 NC_005284.1 + 41049 0.66 0.693429
Target:  5'- -gCGCCGACGUu-UCu-CG-CGGGGCg -3'
miRNA:   3'- uaGCGGCUGCGcuAGuuGCaGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 23120 0.66 0.692352
Target:  5'- --gGCCGACagcguccaguccaGCGAUCAaguugACGUauucaGGGGCa -3'
miRNA:   3'- uagCGGCUG-------------CGCUAGU-----UGCAg----CUCCG- -5'
24925 5' -55.5 NC_005284.1 + 31597 0.66 0.690197
Target:  5'- cUCGCucaCGAuuugcucccuugggUGCGggCGGCGUCGAGGg -3'
miRNA:   3'- uAGCG---GCU--------------GCGCuaGUUGCAGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.