Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 46554 | 0.66 | 0.3967 |
Target: 5'- cACGAGCAGcuaacGCCaGCGuCGGaCGcUCGGCg -3' miRNA: 3'- -UGCUCGUC-----CGG-CGC-GCCcGCaAGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 17071 | 0.66 | 0.3967 |
Target: 5'- gGCGAuCGucGCCGUGUGcGCGUUCGGCg -3' miRNA: 3'- -UGCUcGUc-CGGCGCGCcCGCAAGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 39807 | 0.66 | 0.395825 |
Target: 5'- uCGAGCuucaaccGGGCCGCGUgccgcauugcauGGGCG--CGGCc -3' miRNA: 3'- uGCUCG-------UCCGGCGCG------------CCCGCaaGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 10660 | 0.66 | 0.388009 |
Target: 5'- cGCGAGgaacuGGuGCgCGcCGCGGGCGcgaUCGACa -3' miRNA: 3'- -UGCUCg----UC-CG-GC-GCGCCCGCa--AGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 9562 | 0.66 | 0.384569 |
Target: 5'- gGCGGcGCAGGCagcgcucgccaaaGCGCaGGGCGaUCGcGCu -3' miRNA: 3'- -UGCU-CGUCCGg------------CGCG-CCCGCaAGC-UG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 47721 | 0.66 | 0.379445 |
Target: 5'- cGCGuGCgcagaAGGCCGUGCucGGCGguaCGGCg -3' miRNA: 3'- -UGCuCG-----UCCGGCGCGc-CCGCaa-GCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 16678 | 0.66 | 0.371008 |
Target: 5'- uCGAGCgugAGGCCgGCGUcGGCGUgccgcUGACg -3' miRNA: 3'- uGCUCG---UCCGG-CGCGcCCGCAa----GCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 30248 | 0.66 | 0.362701 |
Target: 5'- -aGAGUcGGCCGUcgaGCGGGCGcgUUCGu- -3' miRNA: 3'- ugCUCGuCCGGCG---CGCCCGC--AAGCug -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 9637 | 0.66 | 0.354523 |
Target: 5'- gGCGGaggcuucagcGCAGGCCGagcuCGCGGGCaugCGAg -3' miRNA: 3'- -UGCU----------CGUCCGGC----GCGCCCGcaaGCUg -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 14463 | 0.67 | 0.346476 |
Target: 5'- aACGAGUAcaagccguGGCCGauacaggcCGCGGGC-UUCGAg -3' miRNA: 3'- -UGCUCGU--------CCGGC--------GCGCCCGcAAGCUg -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 42972 | 0.67 | 0.346476 |
Target: 5'- -gGAGUuuGCCGCGgGGGCGUU--GCa -3' miRNA: 3'- ugCUCGucCGGCGCgCCCGCAAgcUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 11855 | 0.67 | 0.338561 |
Target: 5'- cGCGuuGCAGGCCgacugGCGCGucGGCGUgaagcgggCGAUg -3' miRNA: 3'- -UGCu-CGUCCGG-----CGCGC--CCGCAa-------GCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 10070 | 0.67 | 0.338561 |
Target: 5'- aGCGAGCGGaaCGCGCGGcgaccGCGaccgCGGCg -3' miRNA: 3'- -UGCUCGUCcgGCGCGCC-----CGCaa--GCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 24813 | 0.67 | 0.330778 |
Target: 5'- gUGuAGCGGGCCGaagaCGCacGGGCGUcguuucgcccuUCGGCg -3' miRNA: 3'- uGC-UCGUCCGGC----GCG--CCCGCA-----------AGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 5506 | 0.67 | 0.330778 |
Target: 5'- ---uGguGGCCGCccGCGGGCGgucauuuuUUUGACa -3' miRNA: 3'- ugcuCguCCGGCG--CGCCCGC--------AAGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 8745 | 0.67 | 0.323128 |
Target: 5'- cGCGAauacGCAcaaGCCGcCGCaGcGGCGUUCGGCg -3' miRNA: 3'- -UGCU----CGUc--CGGC-GCG-C-CCGCAAGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 19401 | 0.67 | 0.323128 |
Target: 5'- gACGA--GGGCgGUGCaGGCGUgaUCGGCg -3' miRNA: 3'- -UGCUcgUCCGgCGCGcCCGCA--AGCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 23888 | 0.67 | 0.31561 |
Target: 5'- aGCGAGCGGGgCaGUGCuGGGgGaUCGAg -3' miRNA: 3'- -UGCUCGUCCgG-CGCG-CCCgCaAGCUg -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 1093 | 0.67 | 0.308225 |
Target: 5'- gGCGAGCGcuucaccaucaGCCGCGcCGGGCGaaaGACc -3' miRNA: 3'- -UGCUCGUc----------CGGCGC-GCCCGCaagCUG- -5' |
|||||||
24931 | 5' | -61.9 | NC_005284.1 | + | 53872 | 0.68 | 0.300973 |
Target: 5'- uCGAGCAcagcGGCCGgGaUGGGCGgccgUCGuCg -3' miRNA: 3'- uGCUCGU----CCGGCgC-GCCCGCa---AGCuG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home