miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24931 5' -61.9 NC_005284.1 + 53872 0.68 0.300973
Target:  5'- uCGAGCAcagcGGCCGgGaUGGGCGgccgUCGuCg -3'
miRNA:   3'- uGCUCGU----CCGGCgC-GCCCGCa---AGCuG- -5'
24931 5' -61.9 NC_005284.1 + 48980 0.68 0.300973
Target:  5'- gGCGGcGCAGcgacaccuucGCCGC-CGGGCGUguccaCGGCg -3'
miRNA:   3'- -UGCU-CGUC----------CGGCGcGCCCGCAa----GCUG- -5'
24931 5' -61.9 NC_005284.1 + 48829 0.68 0.293853
Target:  5'- cGCGGcGCAcGCCGCGCGGGUugaugGUUCu-- -3'
miRNA:   3'- -UGCU-CGUcCGGCGCGCCCG-----CAAGcug -5'
24931 5' -61.9 NC_005284.1 + 47807 0.71 0.164538
Target:  5'- gGCGAGCGcuuGGCgGCGCugcgauGGGUGcUCGGCa -3'
miRNA:   3'- -UGCUCGU---CCGgCGCG------CCCGCaAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 47721 0.66 0.379445
Target:  5'- cGCGuGCgcagaAGGCCGUGCucGGCGguaCGGCg -3'
miRNA:   3'- -UGCuCG-----UCCGGCGCGc-CCGCaa-GCUG- -5'
24931 5' -61.9 NC_005284.1 + 46700 0.68 0.286173
Target:  5'- uACGuccGCAGacacugaacgcccGCCGCuCGGGaCGUUCGGCg -3'
miRNA:   3'- -UGCu--CGUC-------------CGGCGcGCCC-GCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 46554 0.66 0.3967
Target:  5'- cACGAGCAGcuaacGCCaGCGuCGGaCGcUCGGCg -3'
miRNA:   3'- -UGCUCGUC-----CGG-CGC-GCCcGCaAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 42972 0.67 0.346476
Target:  5'- -gGAGUuuGCCGCGgGGGCGUU--GCa -3'
miRNA:   3'- ugCUCGucCGGCGCgCCCGCAAgcUG- -5'
24931 5' -61.9 NC_005284.1 + 39807 0.66 0.395825
Target:  5'- uCGAGCuucaaccGGGCCGCGUgccgcauugcauGGGCG--CGGCc -3'
miRNA:   3'- uGCUCG-------UCCGGCGCG------------CCCGCaaGCUG- -5'
24931 5' -61.9 NC_005284.1 + 38915 0.68 0.286865
Target:  5'- gGCGGGCGGGuuGguuagGCGGcuuccCGUUCGGCg -3'
miRNA:   3'- -UGCUCGUCCggCg----CGCCc----GCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 30248 0.66 0.362701
Target:  5'- -aGAGUcGGCCGUcgaGCGGGCGcgUUCGu- -3'
miRNA:   3'- ugCUCGuCCGGCG---CGCCCGC--AAGCug -5'
24931 5' -61.9 NC_005284.1 + 26930 0.68 0.260223
Target:  5'- gGCGAuGC--GCCGgGCGGGCGUcgucuggCGACu -3'
miRNA:   3'- -UGCU-CGucCGGCgCGCCCGCAa------GCUG- -5'
24931 5' -61.9 NC_005284.1 + 26555 0.68 0.273284
Target:  5'- gGCGGGCAguagguGGCCgGCGagaGuGGCGUUCGcCa -3'
miRNA:   3'- -UGCUCGU------CCGG-CGCg--C-CCGCAAGCuG- -5'
24931 5' -61.9 NC_005284.1 + 24813 0.67 0.330778
Target:  5'- gUGuAGCGGGCCGaagaCGCacGGGCGUcguuucgcccuUCGGCg -3'
miRNA:   3'- uGC-UCGUCCGGC----GCG--CCCGCA-----------AGCUG- -5'
24931 5' -61.9 NC_005284.1 + 23888 0.67 0.31561
Target:  5'- aGCGAGCGGGgCaGUGCuGGGgGaUCGAg -3'
miRNA:   3'- -UGCUCGUCCgG-CGCG-CCCgCaAGCUg -5'
24931 5' -61.9 NC_005284.1 + 21563 1.09 0.00023
Target:  5'- gACGAGCAGGCCGCGCGGGCGUUCGACg -3'
miRNA:   3'- -UGCUCGUCCGGCGCGCCCGCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 19401 0.67 0.323128
Target:  5'- gACGA--GGGCgGUGCaGGCGUgaUCGGCg -3'
miRNA:   3'- -UGCUcgUCCGgCGCGcCCGCA--AGCUG- -5'
24931 5' -61.9 NC_005284.1 + 17071 0.66 0.3967
Target:  5'- gGCGAuCGucGCCGUGUGcGCGUUCGGCg -3'
miRNA:   3'- -UGCUcGUc-CGGCGCGCcCGCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 16860 0.69 0.233869
Target:  5'- gACG-GCGGGUCGUaugcgcaggugcugGcCGGuGCGUUCGACg -3'
miRNA:   3'- -UGCuCGUCCGGCG--------------C-GCC-CGCAAGCUG- -5'
24931 5' -61.9 NC_005284.1 + 16678 0.66 0.371008
Target:  5'- uCGAGCgugAGGCCgGCGUcGGCGUgccgcUGACg -3'
miRNA:   3'- uGCUCG---UCCGG-CGCGcCCGCAa----GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.