miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24949 5' -51 NC_005284.1 + 7436 0.66 0.919142
Target:  5'- aGAucgGCCGcgUCGAgaucgGUCG-ACGCa -3'
miRNA:   3'- aCUua-CGGCuaAGCUa----CGGCuUGCGa -5'
24949 5' -51 NC_005284.1 + 42861 0.66 0.919142
Target:  5'- aGAAUGCCGGcgCGAgguUGuuGuGCGUg -3'
miRNA:   3'- aCUUACGGCUaaGCU---ACggCuUGCGa -5'
24949 5' -51 NC_005284.1 + 13268 0.66 0.917242
Target:  5'- cUGAAUGCCGg--CGAcugggugaaguacgUGUCGGACGgUg -3'
miRNA:   3'- -ACUUACGGCuaaGCU--------------ACGGCUUGCgA- -5'
24949 5' -51 NC_005284.1 + 15438 0.66 0.913362
Target:  5'- -cGAUGCCGA-UCGAgccaucggccugcacGCCGAGCGaCa -3'
miRNA:   3'- acUUACGGCUaAGCUa--------------CGGCUUGC-Ga -5'
24949 5' -51 NC_005284.1 + 18579 0.66 0.912705
Target:  5'- ----cGCCGGaaUCGAcgucacGCCGAGCGCg -3'
miRNA:   3'- acuuaCGGCUa-AGCUa-----CGGCUUGCGa -5'
24949 5' -51 NC_005284.1 + 17295 0.66 0.89824
Target:  5'- gUGAccGUGUCGAUgcuUCGAUGgUCGAuaaguggGCGCUg -3'
miRNA:   3'- -ACU--UACGGCUA---AGCUAC-GGCU-------UGCGA- -5'
24949 5' -51 NC_005284.1 + 21157 0.66 0.891652
Target:  5'- aUGAAUGCCGcg-CGcgGCuCGAGCa-- -3'
miRNA:   3'- -ACUUACGGCuaaGCuaCG-GCUUGcga -5'
24949 5' -51 NC_005284.1 + 50947 0.67 0.884065
Target:  5'- cGAAUGCCuAUUgCGAUGCaCGuAUGCc -3'
miRNA:   3'- aCUUACGGcUAA-GCUACG-GCuUGCGa -5'
24949 5' -51 NC_005284.1 + 8656 0.67 0.875401
Target:  5'- cGGcgGUCGuAUUCGGUcguauucGCCGuAACGCUg -3'
miRNA:   3'- aCUuaCGGC-UAAGCUA-------CGGC-UUGCGA- -5'
24949 5' -51 NC_005284.1 + 34007 0.67 0.859677
Target:  5'- cGAggGCCGAUucugcgcguUCGAggcgGUCGAggaGCGCa -3'
miRNA:   3'- aCUuaCGGCUA---------AGCUa---CGGCU---UGCGa -5'
24949 5' -51 NC_005284.1 + 52970 0.67 0.859677
Target:  5'- ---cUGCCGAUgcuUCGAguUGCCGAGgcaauCGCg -3'
miRNA:   3'- acuuACGGCUA---AGCU--ACGGCUU-----GCGa -5'
24949 5' -51 NC_005284.1 + 45093 0.68 0.842136
Target:  5'- gUGAAguUGCCGAgcgccgUUGAcUGCUGcGACGCUg -3'
miRNA:   3'- -ACUU--ACGGCUa-----AGCU-ACGGC-UUGCGA- -5'
24949 5' -51 NC_005284.1 + 936 0.68 0.814083
Target:  5'- --cGUGCUGGacgacgagUUCGGUGCCGAgguguacgccgGCGCg -3'
miRNA:   3'- acuUACGGCU--------AAGCUACGGCU-----------UGCGa -5'
24949 5' -51 NC_005284.1 + 12247 0.69 0.763406
Target:  5'- aUGAAaGCCGuaggcGUUCGA-GCCGAcagccGCGCUu -3'
miRNA:   3'- -ACUUaCGGC-----UAAGCUaCGGCU-----UGCGA- -5'
24949 5' -51 NC_005284.1 + 3815 0.7 0.730082
Target:  5'- gGGAUGgCGAUcuguggaUCGAcgaagcGCCGAACGCa -3'
miRNA:   3'- aCUUACgGCUA-------AGCUa-----CGGCUUGCGa -5'
24949 5' -51 NC_005284.1 + 30469 0.7 0.709136
Target:  5'- cGAcAUGCCGAccagcacacgCGG-GCCGAGCGCa -3'
miRNA:   3'- aCU-UACGGCUaa--------GCUaCGGCUUGCGa -5'
24949 5' -51 NC_005284.1 + 12788 0.71 0.661922
Target:  5'- uUGAAUGUCGAUUCGcgauuauucagGCCGucCGCg -3'
miRNA:   3'- -ACUUACGGCUAAGCua---------CGGCuuGCGa -5'
24949 5' -51 NC_005284.1 + 40265 0.71 0.630099
Target:  5'- aUGAAaGCUGAgu-GGUGUCGGGCGCUa -3'
miRNA:   3'- -ACUUaCGGCUaagCUACGGCUUGCGA- -5'
24949 5' -51 NC_005284.1 + 21166 0.72 0.618725
Target:  5'- uUGcAUGCCGugaCGAUGCCGAuuggaucuggccGCGCg -3'
miRNA:   3'- -ACuUACGGCuaaGCUACGGCU------------UGCGa -5'
24949 5' -51 NC_005284.1 + 30451 0.73 0.518075
Target:  5'- cGAGUcGCCGAUUCGugugcUGCCGGccgGCGUg -3'
miRNA:   3'- aCUUA-CGGCUAAGCu----ACGGCU---UGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.