miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 3' -65.4 NC_005284.1 + 21567 0.66 0.298099
Target:  5'- aGCagGCCGCGcgGGCGU-UCGa-CGCGCa -3'
miRNA:   3'- -CGg-CGGCGCa-CCGCGcAGCggGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 15103 0.66 0.298099
Target:  5'- cCCGCCGUuUGGCGgGUC-CUCGUa- -3'
miRNA:   3'- cGGCGGCGcACCGCgCAGcGGGCGcg -5'
24957 3' -65.4 NC_005284.1 + 31442 0.66 0.29331
Target:  5'- cGCCGCUGCGgcgcgccgGGCccccaauugaccgccGUGcCGCCggaaaagCGCGCa -3'
miRNA:   3'- -CGGCGGCGCa-------CCG---------------CGCaGCGG-------GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 9132 0.66 0.291277
Target:  5'- aGuuGCCGgGUGuCGCGgaugCuaUCGCGCg -3'
miRNA:   3'- -CggCGGCgCACcGCGCa---GcgGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 31008 0.66 0.284577
Target:  5'- uGCCGCCGUGcGuGCGgaaGUUGCCgGUugGCu -3'
miRNA:   3'- -CGGCGGCGCaC-CGCg--CAGCGGgCG--CG- -5'
24957 3' -65.4 NC_005284.1 + 10204 0.66 0.284577
Target:  5'- -gCGCCGUcUGcGC-CGUCGC-CGCGCu -3'
miRNA:   3'- cgGCGGCGcAC-CGcGCAGCGgGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 12481 0.66 0.276051
Target:  5'- cCCGCCGUu--GCGCGcCGgcgaauccccuccuCCCGCGCu -3'
miRNA:   3'- cGGCGGCGcacCGCGCaGC--------------GGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 48961 0.66 0.271545
Target:  5'- cGCCGCCG---GGCGUGUC-CaCgGCGCc -3'
miRNA:   3'- -CGGCGGCgcaCCGCGCAGcG-GgCGCG- -5'
24957 3' -65.4 NC_005284.1 + 39072 0.66 0.271545
Target:  5'- -gCGCaUGCGU--UGCGUCGCCaGCGCg -3'
miRNA:   3'- cgGCG-GCGCAccGCGCAGCGGgCGCG- -5'
24957 3' -65.4 NC_005284.1 + 6002 0.66 0.271545
Target:  5'- uGCCGCCuGCaucucgGCGUCGUUCGCGUa -3'
miRNA:   3'- -CGGCGG-CGcaccg-CGCAGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 9601 0.66 0.271545
Target:  5'- cGCUGCCGCGgcGGCGaa--GCUucagaaCGCGCa -3'
miRNA:   3'- -CGGCGGCGCa-CCGCgcagCGG------GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 54372 0.66 0.26521
Target:  5'- aGCCGugcaagcaCCGgG-GGUGCGgugCGCUCGuCGCg -3'
miRNA:   3'- -CGGC--------GGCgCaCCGCGCa--GCGGGC-GCG- -5'
24957 3' -65.4 NC_005284.1 + 7730 0.66 0.26521
Target:  5'- uGCCGCCGCc-GGCgGCGUaacucCCCGauCGCa -3'
miRNA:   3'- -CGGCGGCGcaCCG-CGCAgc---GGGC--GCG- -5'
24957 3' -65.4 NC_005284.1 + 42504 0.66 0.26521
Target:  5'- cGCCGCUgguuccuuGCG-GGaGCGUUGCUCGuUGCg -3'
miRNA:   3'- -CGGCGG--------CGCaCCgCGCAGCGGGC-GCG- -5'
24957 3' -65.4 NC_005284.1 + 11007 0.66 0.261468
Target:  5'- gGCCgGCCauGCG-GGCcuGCGcaucauucgcgcccuUCGUCCGCGCu -3'
miRNA:   3'- -CGG-CGG--CGCaCCG--CGC---------------AGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 46463 0.66 0.258996
Target:  5'- uGCCGCCgaGCGUccgacgcuGGCGUuaGcUGCUCGUGCa -3'
miRNA:   3'- -CGGCGG--CGCA--------CCGCG--CaGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 45444 0.66 0.258996
Target:  5'- cGgCGUCGCGauugucgGGCGaccaGUUGCUCGCGg -3'
miRNA:   3'- -CgGCGGCGCa------CCGCg---CAGCGGGCGCg -5'
24957 3' -65.4 NC_005284.1 + 50247 0.66 0.258996
Target:  5'- cGCCGaUCGCGUuGCGCaaCGaCUGCGCa -3'
miRNA:   3'- -CGGC-GGCGCAcCGCGcaGCgGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 10521 0.66 0.258382
Target:  5'- cGCCGcCCGCGUcgccaaauuccGauaugccgacuGCGCGUcaucggcCGCCCGCGa -3'
miRNA:   3'- -CGGC-GGCGCA-----------C-----------CGCGCA-------GCGGGCGCg -5'
24957 3' -65.4 NC_005284.1 + 21658 0.67 0.255325
Target:  5'- aGCCGCCccucaacccguucacGCagaGGCaGCaUCGCCCGCuGCg -3'
miRNA:   3'- -CGGCGG---------------CGca-CCG-CGcAGCGGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.