miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24965 3' -60.4 NC_005284.1 + 19465 0.66 0.473669
Target:  5'- gGCaggCGCUGAucgGUGCGGGCUGGaucacgaaCGCGa -3'
miRNA:   3'- -CGaa-GCGGCU---CGCGCUCGACC--------GCGCg -5'
24965 3' -60.4 NC_005284.1 + 22120 0.66 0.473669
Target:  5'- cGCUggccccCGCCGAuGCGgGAGaggcGGCaGCGUg -3'
miRNA:   3'- -CGAa-----GCGGCU-CGCgCUCga--CCG-CGCG- -5'
24965 3' -60.4 NC_005284.1 + 9239 0.66 0.473669
Target:  5'- ---gCGCUGAcGCGCGcGGCgGGCG-GCa -3'
miRNA:   3'- cgaaGCGGCU-CGCGC-UCGaCCGCgCG- -5'
24965 3' -60.4 NC_005284.1 + 44717 0.66 0.472693
Target:  5'- cGCggUCGCCGcGCGUuccgcucgcucacGAGCcugcgUGGCaaGCGCg -3'
miRNA:   3'- -CGa-AGCGGCuCGCG-------------CUCG-----ACCG--CGCG- -5'
24965 3' -60.4 NC_005284.1 + 36869 0.66 0.470745
Target:  5'- cGCcUUGUCGAGCGUGAuccuuucgccagccGCUG-CGCGg -3'
miRNA:   3'- -CGaAGCGGCUCGCGCU--------------CGACcGCGCg -5'
24965 3' -60.4 NC_005284.1 + 40162 0.66 0.463961
Target:  5'- aCggCGUCGAgguagcGCGCGAGCguucGGCGC-Cg -3'
miRNA:   3'- cGaaGCGGCU------CGCGCUCGa---CCGCGcG- -5'
24965 3' -60.4 NC_005284.1 + 6974 0.66 0.463961
Target:  5'- aUUUCGUCGugacCGCGuacaUGGCGCGCu -3'
miRNA:   3'- cGAAGCGGCuc--GCGCucg-ACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 44405 0.66 0.463961
Target:  5'- -gUUCGUCGAcGCGCGAuuacugccucGUUGGCGacuagauuCGCg -3'
miRNA:   3'- cgAAGCGGCU-CGCGCU----------CGACCGC--------GCG- -5'
24965 3' -60.4 NC_005284.1 + 51681 0.66 0.463961
Target:  5'- aGCuUUCGCgaucuCGAGCGC-AGUUucGGCGCGa -3'
miRNA:   3'- -CG-AAGCG-----GCUCGCGcUCGA--CCGCGCg -5'
24965 3' -60.4 NC_005284.1 + 22745 0.66 0.462032
Target:  5'- --aUgGCCGAGCGgcuGCggucgaucaaggGGCGCGCg -3'
miRNA:   3'- cgaAgCGGCUCGCgcuCGa-----------CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 20492 0.66 0.461069
Target:  5'- cGCUgaugCGCUGAcggacgagcacaucGCGaCGcugaaacuGGCUGcGCGCGCa -3'
miRNA:   3'- -CGAa---GCGGCU--------------CGC-GC--------UCGAC-CGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 45128 0.66 0.454359
Target:  5'- cGCaUCGCuCGcauGCccGCGAGCUcGGCcuGCGCu -3'
miRNA:   3'- -CGaAGCG-GCu--CG--CGCUCGA-CCG--CGCG- -5'
24965 3' -60.4 NC_005284.1 + 44111 0.66 0.444865
Target:  5'- cGCcgUGUCGAucGCGCccGC-GGCGCGCa -3'
miRNA:   3'- -CGaaGCGGCU--CGCGcuCGaCCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 32967 0.66 0.444865
Target:  5'- cGCUggaagCGCCGGGCaCGccgucgccaccGGCUGcCGUGCa -3'
miRNA:   3'- -CGAa----GCGGCUCGcGC-----------UCGACcGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 28589 0.66 0.435484
Target:  5'- cCUUCaCCGuguauccaaAGUGCGAcagGUUGGCGCGUu -3'
miRNA:   3'- cGAAGcGGC---------UCGCGCU---CGACCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 6590 0.66 0.435484
Target:  5'- cGCgUgGCCGcuGCGCGAGCUGucaccgcaacGgGCGUc -3'
miRNA:   3'- -CGaAgCGGCu-CGCGCUCGAC----------CgCGCG- -5'
24965 3' -60.4 NC_005284.1 + 35835 0.66 0.434552
Target:  5'- uGCgUCGCCG-GCcaucgGCGGGgUgauuaggucgaucGGCGCGCg -3'
miRNA:   3'- -CGaAGCGGCuCG-----CGCUCgA-------------CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 21296 0.66 0.434552
Target:  5'- cGCUUCcCCGcuaugucggcagcAGCGCcGGCcgacGGCGCGUg -3'
miRNA:   3'- -CGAAGcGGC-------------UCGCGcUCGa---CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 7012 0.66 0.426218
Target:  5'- cGC-UCGCCGGGC-UGA-CUGGCG-GCc -3'
miRNA:   3'- -CGaAGCGGCUCGcGCUcGACCGCgCG- -5'
24965 3' -60.4 NC_005284.1 + 10026 0.66 0.426218
Target:  5'- uGCgcaaGCCGAGCGUGA--UGuCGCGCu -3'
miRNA:   3'- -CGaag-CGGCUCGCGCUcgACcGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.