miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24967 5' -57.1 NC_005284.1 + 48442 0.66 0.574552
Target:  5'- cGCCGCguGcagugcaguaccagcUUCGCCGgaugCAGCAGUCg- -3'
miRNA:   3'- uCGGCG--U---------------AAGCGGCaa--GUCGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 33253 0.66 0.570196
Target:  5'- aAGCCGaugugCGCCGaUCAGguGCUc- -3'
miRNA:   3'- -UCGGCguaa-GCGGCaAGUCguCGGac -5'
24967 5' -57.1 NC_005284.1 + 13783 0.66 0.570196
Target:  5'- -uCCGCGacgaUCGCCGUUCcAGCAauGCCg- -3'
miRNA:   3'- ucGGCGUa---AGCGGCAAG-UCGU--CGGac -5'
24967 5' -57.1 NC_005284.1 + 44678 0.66 0.570196
Target:  5'- cGCCGCGcuuucggUCGCCGUcuUCAGacccGCCg- -3'
miRNA:   3'- uCGGCGUa------AGCGGCA--AGUCgu--CGGac -5'
24967 5' -57.1 NC_005284.1 + 7091 0.66 0.559343
Target:  5'- gAGCgCGCGUgcccuuccUUGCCG-UCAGCGGCa-- -3'
miRNA:   3'- -UCG-GCGUA--------AGCGGCaAGUCGUCGgac -5'
24967 5' -57.1 NC_005284.1 + 48372 0.66 0.559343
Target:  5'- aAGUCGaCAUagccUUGCCGgcgaUUCGGCAGCaCUGc -3'
miRNA:   3'- -UCGGC-GUA----AGCGGC----AAGUCGUCG-GAC- -5'
24967 5' -57.1 NC_005284.1 + 3399 0.66 0.549624
Target:  5'- cGCCGCGUcgagccCGCUGaaguucacuguagagUCAGCGGCCg- -3'
miRNA:   3'- uCGGCGUAa-----GCGGCa--------------AGUCGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 44598 0.66 0.548548
Target:  5'- aAGCCGCcgacCGCCGc-CAGCaAGCCg- -3'
miRNA:   3'- -UCGGCGuaa-GCGGCaaGUCG-UCGGac -5'
24967 5' -57.1 NC_005284.1 + 16043 0.67 0.537818
Target:  5'- -uCCGCAUUgCGCCGguaaucgUCGGCAGUa-- -3'
miRNA:   3'- ucGGCGUAA-GCGGCa------AGUCGUCGgac -5'
24967 5' -57.1 NC_005284.1 + 1010 0.67 0.527163
Target:  5'- cGCCGCAgcaGCCGgcaUCAGCaaaccguaucucAGCCa- -3'
miRNA:   3'- uCGGCGUaagCGGCa--AGUCG------------UCGGac -5'
24967 5' -57.1 NC_005284.1 + 50299 0.67 0.515534
Target:  5'- cGGCCGaCcgUCGCCGaggguucgaaguaUUUGGCGGCgUGc -3'
miRNA:   3'- -UCGGC-GuaAGCGGC-------------AAGUCGUCGgAC- -5'
24967 5' -57.1 NC_005284.1 + 18093 0.67 0.506097
Target:  5'- aAGCCGCGagcUCGCgGcgCAGCAGUa-- -3'
miRNA:   3'- -UCGGCGUa--AGCGgCaaGUCGUCGgac -5'
24967 5' -57.1 NC_005284.1 + 37383 0.67 0.505053
Target:  5'- cGCCGCGgucgUCGCCGUagcguugcaccuUCAcaccgacGUAGCCg- -3'
miRNA:   3'- uCGGCGUa---AGCGGCA------------AGU-------CGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 14488 0.67 0.501926
Target:  5'- aGGCCGCGggcUUCGagcagacauccgaCGcgCAGCAGCCa- -3'
miRNA:   3'- -UCGGCGU---AAGCg------------GCaaGUCGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 5699 0.67 0.495699
Target:  5'- cGCCGgAUUCGCaCGU--GGCAGCUc- -3'
miRNA:   3'- uCGGCgUAAGCG-GCAagUCGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 46031 0.67 0.485399
Target:  5'- cGCCGaa--CGCCGcugCGGCGGCUUGu -3'
miRNA:   3'- uCGGCguaaGCGGCaa-GUCGUCGGAC- -5'
24967 5' -57.1 NC_005284.1 + 44164 0.68 0.475203
Target:  5'- cGCCGCucgUCGCCGacacgaAGCGGUCg- -3'
miRNA:   3'- uCGGCGua-AGCGGCaag---UCGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 41532 0.68 0.472165
Target:  5'- cGCCgGCAUUCaGCaCGUUCAGUugagacaggucgccGGCUUGa -3'
miRNA:   3'- uCGG-CGUAAG-CG-GCAAGUCG--------------UCGGAC- -5'
24967 5' -57.1 NC_005284.1 + 6757 0.68 0.458118
Target:  5'- cGGCaCGCAgcacaugaaggcucaGCCGUUCAuGCGGCCg- -3'
miRNA:   3'- -UCG-GCGUaag------------CGGCAAGU-CGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 21779 0.68 0.445278
Target:  5'- cGGCUGCGcgUCGCUGUccgacacugcaCGGCAGCCg- -3'
miRNA:   3'- -UCGGCGUa-AGCGGCAa----------GUCGUCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.