miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24968 3' -55.4 NC_005284.1 + 53579 0.66 0.721486
Target:  5'- ----gGCGCGCGCccaUGcCGGUCAGCa -3'
miRNA:   3'- cuuagUGCGCGCGc--GCuGCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 32247 0.66 0.721486
Target:  5'- uGAAUCcuuuCGCcUGCGCGACGAUCu--- -3'
miRNA:   3'- -CUUAGu---GCGcGCGCGCUGCUAGucga -5'
24968 3' -55.4 NC_005284.1 + 35303 0.66 0.710763
Target:  5'- cGAUCAuCGCGUuCGUGAuccagcccgcacCGAUCAGCg -3'
miRNA:   3'- cUUAGU-GCGCGcGCGCU------------GCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 9142 0.66 0.710763
Target:  5'- -uGUCGCGgaugcuauCGCGCGCGGC-AUgGGCa -3'
miRNA:   3'- cuUAGUGC--------GCGCGCGCUGcUAgUCGa -5'
24968 3' -55.4 NC_005284.1 + 1391 0.66 0.699962
Target:  5'- cGAUC-CGCGCGUGCuGGCGAa-AGCc -3'
miRNA:   3'- cUUAGuGCGCGCGCG-CUGCUagUCGa -5'
24968 3' -55.4 NC_005284.1 + 1219 0.66 0.689095
Target:  5'- ---gCAUGgGCGCGCGcCGG-CAGCc -3'
miRNA:   3'- cuuaGUGCgCGCGCGCuGCUaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 16984 0.66 0.689095
Target:  5'- -cAUCACGCcgaacGCGCacacgGCGACGAUC-GCc -3'
miRNA:   3'- cuUAGUGCG-----CGCG-----CGCUGCUAGuCGa -5'
24968 3' -55.4 NC_005284.1 + 45000 0.66 0.689095
Target:  5'- cGAcgUugGCGCGCGCcguuGCGAcgUgAGCUu -3'
miRNA:   3'- -CUuaGugCGCGCGCGc---UGCU--AgUCGA- -5'
24968 3' -55.4 NC_005284.1 + 54671 0.66 0.678173
Target:  5'- -uGUCACGCggcgaagacgGCGCGCGAgCGGUugCGGUg -3'
miRNA:   3'- cuUAGUGCG----------CGCGCGCU-GCUA--GUCGa -5'
24968 3' -55.4 NC_005284.1 + 35458 0.66 0.678173
Target:  5'- -cGUCGCGCuggaucuCGCGCGguGCGAgCAGCUu -3'
miRNA:   3'- cuUAGUGCGc------GCGCGC--UGCUaGUCGA- -5'
24968 3' -55.4 NC_005284.1 + 9838 0.66 0.678173
Target:  5'- -cAUCACGgGCacgcccuaCGCGGCGAUCAucGCUc -3'
miRNA:   3'- cuUAGUGCgCGc-------GCGCUGCUAGU--CGA- -5'
24968 3' -55.4 NC_005284.1 + 46262 0.66 0.678173
Target:  5'- -cAUCuACGCGCGUcCGAUG-UCGGCg -3'
miRNA:   3'- cuUAG-UGCGCGCGcGCUGCuAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 14613 0.66 0.678173
Target:  5'- uGGUCGCGaCGCaCGUGGCGGUUcGCg -3'
miRNA:   3'- cUUAGUGC-GCGcGCGCUGCUAGuCGa -5'
24968 3' -55.4 NC_005284.1 + 18475 0.66 0.667206
Target:  5'- --cUCGCGCGgGUGCGcgccgagaacGCGcUCGGCg -3'
miRNA:   3'- cuuAGUGCGCgCGCGC----------UGCuAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 9626 0.66 0.667206
Target:  5'- ----aACGCGCaaGCGGCGGaggcuUCAGCg -3'
miRNA:   3'- cuuagUGCGCGcgCGCUGCU-----AGUCGa -5'
24968 3' -55.4 NC_005284.1 + 11055 0.66 0.667206
Target:  5'- ---aCGCGCGagcuCGCGCuGAUGaAUCAGCa -3'
miRNA:   3'- cuuaGUGCGC----GCGCG-CUGC-UAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 37646 0.67 0.656207
Target:  5'- ---gCACG-GC-CGCGACGAUgAGCUu -3'
miRNA:   3'- cuuaGUGCgCGcGCGCUGCUAgUCGA- -5'
24968 3' -55.4 NC_005284.1 + 17664 0.67 0.656207
Target:  5'- aGAUCACGgGCgucuaccuGCGCG-CGAUCGuGCg -3'
miRNA:   3'- cUUAGUGCgCG--------CGCGCuGCUAGU-CGa -5'
24968 3' -55.4 NC_005284.1 + 39601 0.67 0.656207
Target:  5'- ----gACGCGaGCGCGAacugguCGGUCGGCa -3'
miRNA:   3'- cuuagUGCGCgCGCGCU------GCUAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 16699 0.67 0.645186
Target:  5'- --cUCGCGUcuucgucCGCGCGACGAgccacaUCGGCa -3'
miRNA:   3'- cuuAGUGCGc------GCGCGCUGCU------AGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.