miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24971 3' -55.1 NC_005284.1 + 34253 0.66 0.739121
Target:  5'- cCUGCGGcgUAAC-UGCGCGCGcaGCCa -3'
miRNA:   3'- -GACGCUa-GUUGuACGCGUGCucCGGc -5'
24971 3' -55.1 NC_005284.1 + 26808 0.66 0.739121
Target:  5'- aUGCGAUCucgagagcCAUGCGUugcuCGAgcguaugccGGCCGa -3'
miRNA:   3'- gACGCUAGuu------GUACGCGu---GCU---------CCGGC- -5'
24971 3' -55.1 NC_005284.1 + 1209 0.66 0.728537
Target:  5'- aUGCuGAcCGGCAUGgGCGCGc-GCCGg -3'
miRNA:   3'- gACG-CUaGUUGUACgCGUGCucCGGC- -5'
24971 3' -55.1 NC_005284.1 + 23354 0.66 0.728537
Target:  5'- -gGCGcgCcGCAgcgGCGCACGucGCCc -3'
miRNA:   3'- gaCGCuaGuUGUa--CGCGUGCucCGGc -5'
24971 3' -55.1 NC_005284.1 + 16049 0.66 0.728537
Target:  5'- uUGCGccgguaaucGUCGGCAguaaGCGCGgGGGGCUc -3'
miRNA:   3'- gACGC---------UAGUUGUa---CGCGUgCUCCGGc -5'
24971 3' -55.1 NC_005284.1 + 44209 0.66 0.717857
Target:  5'- -aGCG-UCAACGcGCGCuuccgagcuggGCaGGGGCCGg -3'
miRNA:   3'- gaCGCuAGUUGUaCGCG-----------UG-CUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 43375 0.66 0.717857
Target:  5'- -cGCGAUCGACgcagcgcgucaaGUcccGCGCuguCGAGGCgCGa -3'
miRNA:   3'- gaCGCUAGUUG------------UA---CGCGu--GCUCCG-GC- -5'
24971 3' -55.1 NC_005284.1 + 39685 0.66 0.717857
Target:  5'- -gGUGcUCGACAaGCGCgccGCGAGGCa- -3'
miRNA:   3'- gaCGCuAGUUGUaCGCG---UGCUCCGgc -5'
24971 3' -55.1 NC_005284.1 + 44762 0.66 0.70709
Target:  5'- -cGCGAcaucacgcUCGGCuUGCGCA--AGGCCGc -3'
miRNA:   3'- gaCGCU--------AGUUGuACGCGUgcUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 5438 0.66 0.70709
Target:  5'- gCUGCGAccgauaguUCGGuCGUcGCGCACGcGuGCCGu -3'
miRNA:   3'- -GACGCU--------AGUU-GUA-CGCGUGCuC-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 15937 0.66 0.70709
Target:  5'- -gGCGuUCcuGACGUcgGCGCGCGAcGCCGg -3'
miRNA:   3'- gaCGCuAG--UUGUA--CGCGUGCUcCGGC- -5'
24971 3' -55.1 NC_005284.1 + 39140 0.66 0.700594
Target:  5'- uUGCGAagcgcagucagaucgUCGucauuCAUGCGCAUGccuucgagcAGGCCGc -3'
miRNA:   3'- gACGCU---------------AGUu----GUACGCGUGC---------UCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 40164 0.66 0.69625
Target:  5'- -gGCG-UCGAgGUaGCGCGCGAGcguucggcGCCGg -3'
miRNA:   3'- gaCGCuAGUUgUA-CGCGUGCUC--------CGGC- -5'
24971 3' -55.1 NC_005284.1 + 45210 0.66 0.69625
Target:  5'- -cGCGAUCGcCcUGCGCuuugGCGAGcGCUGc -3'
miRNA:   3'- gaCGCUAGUuGuACGCG----UGCUC-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 9469 0.66 0.69625
Target:  5'- gUGUGAUCGGCGUgacgauaagGCGCAUucGGCUa -3'
miRNA:   3'- gACGCUAGUUGUA---------CGCGUGcuCCGGc -5'
24971 3' -55.1 NC_005284.1 + 49867 0.66 0.695162
Target:  5'- uCUGCGAUUgcuugaagcggaaGGCcgGcCGC-CGGGGCUGa -3'
miRNA:   3'- -GACGCUAG-------------UUGuaC-GCGuGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 11335 0.67 0.674393
Target:  5'- -aGCgGAUCGcGCAacUGCGCGuCGAGGCgGu -3'
miRNA:   3'- gaCG-CUAGU-UGU--ACGCGU-GCUCCGgC- -5'
24971 3' -55.1 NC_005284.1 + 12783 0.67 0.674393
Target:  5'- cCU-CGAUCGGCAUGCGgGCGcGGaGUCGu -3'
miRNA:   3'- -GAcGCUAGUUGUACGCgUGC-UC-CGGC- -5'
24971 3' -55.1 NC_005284.1 + 48963 0.67 0.641332
Target:  5'- aCUGC-AUCGACGaagcggugcUGCGCggcuggACGGGGCUGu -3'
miRNA:   3'- -GACGcUAGUUGU---------ACGCG------UGCUCCGGC- -5'
24971 3' -55.1 NC_005284.1 + 6998 0.67 0.641332
Target:  5'- -cGCGcUCGACAUgGCGCuCGccGGGCUGa -3'
miRNA:   3'- gaCGCuAGUUGUA-CGCGuGC--UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.