miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24971 5' -58 NC_005284.1 + 23613 0.66 0.606254
Target:  5'- aCCGACuGcCGGauaacgucuggaucgGCGCGaCGAUCGUCAa -3'
miRNA:   3'- aGGCUG-C-GCCa--------------CGCGCcGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 16883 0.66 0.594462
Target:  5'- gCUGGC-CGGUGCGUucgacGGCAAgacgaCGUCGc -3'
miRNA:   3'- aGGCUGcGCCACGCG-----CCGUUa----GCAGU- -5'
24971 5' -58 NC_005284.1 + 17939 0.66 0.583773
Target:  5'- gCCGAgGCGGa-CGCGGCAaagcaagugcgAUCGcCAa -3'
miRNA:   3'- aGGCUgCGCCacGCGCCGU-----------UAGCaGU- -5'
24971 5' -58 NC_005284.1 + 53881 0.66 0.573123
Target:  5'- -gCGGC-CGGgaUGgGCGGCcGUCGUCGc -3'
miRNA:   3'- agGCUGcGCC--ACgCGCCGuUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 6395 0.66 0.562519
Target:  5'- uUUCGACGCucGGauagaUGUGCGuGCcGUCGUCGu -3'
miRNA:   3'- -AGGCUGCG--CC-----ACGCGC-CGuUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 14042 0.66 0.562519
Target:  5'- aUCCGgaaGCGG-G-GCGGCAGgcuggCGUCAu -3'
miRNA:   3'- -AGGCug-CGCCaCgCGCCGUUa----GCAGU- -5'
24971 5' -58 NC_005284.1 + 12041 0.66 0.562519
Target:  5'- gCCGaccucGCGCGGUuuucggcgcGUGCGGCGAU-GUCu -3'
miRNA:   3'- aGGC-----UGCGCCA---------CGCGCCGUUAgCAGu -5'
24971 5' -58 NC_005284.1 + 53781 0.67 0.541478
Target:  5'- gCUGAUGcCGGcUGCuGCGGCGAgcgcaucuugCGUCAu -3'
miRNA:   3'- aGGCUGC-GCC-ACG-CGCCGUUa---------GCAGU- -5'
24971 5' -58 NC_005284.1 + 12788 0.67 0.541478
Target:  5'- aUCGGCauGCGG-GCGCGG-AGUCGUUc -3'
miRNA:   3'- aGGCUG--CGCCaCGCGCCgUUAGCAGu -5'
24971 5' -58 NC_005284.1 + 12010 0.67 0.520707
Target:  5'- gCCGGCGCGagguuguuGUGCGUGGUcgcAAUCGcCc -3'
miRNA:   3'- aGGCUGCGC--------CACGCGCCG---UUAGCaGu -5'
24971 5' -58 NC_005284.1 + 22131 0.67 0.510438
Target:  5'- gCCGAUGCGGgagaggcggcaGCGUGGCGcuAUCGa-- -3'
miRNA:   3'- aGGCUGCGCCa----------CGCGCCGU--UAGCagu -5'
24971 5' -58 NC_005284.1 + 2063 0.67 0.490161
Target:  5'- -aUGACGUGGUGUGuCaGCAA-CGUCAu -3'
miRNA:   3'- agGCUGCGCCACGC-GcCGUUaGCAGU- -5'
24971 5' -58 NC_005284.1 + 11583 0.68 0.460476
Target:  5'- aUCGACGCGGaGCucggcgacuacGCGGCcgagCGUCAg -3'
miRNA:   3'- aGGCUGCGCCaCG-----------CGCCGuua-GCAGU- -5'
24971 5' -58 NC_005284.1 + 15106 0.68 0.460476
Target:  5'- aUCCG-CGCGaGUGCuGCGGgc-UCGUCGu -3'
miRNA:   3'- -AGGCuGCGC-CACG-CGCCguuAGCAGU- -5'
24971 5' -58 NC_005284.1 + 11328 0.68 0.450794
Target:  5'- aUCCGGCaGCGGaucgcgcaacUGCGCgucgaGGCGGUCG-CAa -3'
miRNA:   3'- -AGGCUG-CGCC----------ACGCG-----CCGUUAGCaGU- -5'
24971 5' -58 NC_005284.1 + 15895 0.68 0.450794
Target:  5'- --aGAgGCGGUGCGCGcGCuAUCGg-- -3'
miRNA:   3'- aggCUgCGCCACGCGC-CGuUAGCagu -5'
24971 5' -58 NC_005284.1 + 16027 0.69 0.409575
Target:  5'- gUCgGGCGCGacgagauccgcauUGCGcCGGUAAUCGUCGg -3'
miRNA:   3'- -AGgCUGCGCc------------ACGC-GCCGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 22748 0.69 0.386349
Target:  5'- gCCGAgcggcUGCGGUcgaucaagggGCGC-GCGAUCGUCAg -3'
miRNA:   3'- aGGCU-----GCGCCA----------CGCGcCGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 37777 0.7 0.37765
Target:  5'- cUCGACGuuGaucGCGuCGGCGAUCGUCGc -3'
miRNA:   3'- aGGCUGCgcCa--CGC-GCCGUUAGCAGU- -5'
24971 5' -58 NC_005284.1 + 27678 0.7 0.360652
Target:  5'- gCCGGCGUGGcGCGCGG--GUCGcCGc -3'
miRNA:   3'- aGGCUGCGCCaCGCGCCguUAGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.