miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24972 3' -57.9 NC_005284.1 + 20822 0.66 0.58801
Target:  5'- gCAGCccGCAgca-GCGCCGgcCGACgAGCGGg -3'
miRNA:   3'- -GUCG--CGUagaaCGCGGC--GCUG-UCGCC- -5'
24972 3' -57.9 NC_005284.1 + 4686 0.66 0.58801
Target:  5'- aAGCGgGgaUCaUUGCGCCGCcGCAaCGGa -3'
miRNA:   3'- gUCGCgU--AG-AACGCGGCGcUGUcGCC- -5'
24972 3' -57.9 NC_005284.1 + 44660 0.66 0.577277
Target:  5'- gAGCGcCGUC-UGCGCCGUcGCcGCGc -3'
miRNA:   3'- gUCGC-GUAGaACGCGGCGcUGuCGCc -5'
24972 3' -57.9 NC_005284.1 + 21606 0.66 0.577277
Target:  5'- aAGCGUugggcaagAUCUcgcGCGCCGCGcucgacgccgaGCAGCGu -3'
miRNA:   3'- gUCGCG--------UAGAa--CGCGGCGC-----------UGUCGCc -5'
24972 3' -57.9 NC_005284.1 + 23198 0.66 0.577277
Target:  5'- uGGCuGCAgc-UGCGUCGaCGACGGgCGGu -3'
miRNA:   3'- gUCG-CGUagaACGCGGC-GCUGUC-GCC- -5'
24972 3' -57.9 NC_005284.1 + 43923 0.66 0.569789
Target:  5'- gGGU-CGUCUUGCGCCaacugaugcugcgcgGCGACGagagcuuGCGGg -3'
miRNA:   3'- gUCGcGUAGAACGCGG---------------CGCUGU-------CGCC- -5'
24972 3' -57.9 NC_005284.1 + 38614 0.66 0.566587
Target:  5'- cCAGCGcCAUCgacGCGCCGagccccauCAGCGa -3'
miRNA:   3'- -GUCGC-GUAGaa-CGCGGCgcu-----GUCGCc -5'
24972 3' -57.9 NC_005284.1 + 39684 0.66 0.555948
Target:  5'- aGGUGC-UCgacaagcGCGCCGCGagGCAGaCGGc -3'
miRNA:   3'- gUCGCGuAGaa-----CGCGGCGC--UGUC-GCC- -5'
24972 3' -57.9 NC_005284.1 + 11568 0.66 0.555948
Target:  5'- gAGCGCAg--UGCGCagauCGAC-GCGGa -3'
miRNA:   3'- gUCGCGUagaACGCGgc--GCUGuCGCC- -5'
24972 3' -57.9 NC_005284.1 + 14949 0.66 0.554888
Target:  5'- aCAGCGagaaCAUCggccGCGCCaugcaauGCGGCAcGCGGc -3'
miRNA:   3'- -GUCGC----GUAGaa--CGCGG-------CGCUGU-CGCC- -5'
24972 3' -57.9 NC_005284.1 + 7620 0.66 0.551709
Target:  5'- uCGGCGCcugauguacGCGCCGguCGuACAGCGGg -3'
miRNA:   3'- -GUCGCGuagaa----CGCGGC--GC-UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 42861 0.66 0.545369
Target:  5'- uCAGCGCcuccucggccAUC-UGCGCUGCGuucuGC-GCGGa -3'
miRNA:   3'- -GUCGCG----------UAGaACGCGGCGC----UGuCGCC- -5'
24972 3' -57.9 NC_005284.1 + 23567 0.66 0.544314
Target:  5'- aAGCGCAUCggcaaCGUCGCGGCGaugcuacGCGa -3'
miRNA:   3'- gUCGCGUAGaac--GCGGCGCUGU-------CGCc -5'
24972 3' -57.9 NC_005284.1 + 20728 0.67 0.534855
Target:  5'- aGGCGUAUUUccgaGCCGCGAagcCAGCGa -3'
miRNA:   3'- gUCGCGUAGAacg-CGGCGCU---GUCGCc -5'
24972 3' -57.9 NC_005284.1 + 37054 0.67 0.534855
Target:  5'- cCGGUGCG-CcUGCGCCuGCGACGuGCa- -3'
miRNA:   3'- -GUCGCGUaGaACGCGG-CGCUGU-CGcc -5'
24972 3' -57.9 NC_005284.1 + 28106 0.67 0.53276
Target:  5'- aAGCGCAUCcuugaagucgaGCGCgGCGAagaGGCGu -3'
miRNA:   3'- gUCGCGUAGaa---------CGCGgCGCUg--UCGCc -5'
24972 3' -57.9 NC_005284.1 + 17770 0.67 0.531714
Target:  5'- gCAGCGCGUCgaggacgagguaaagGCgaacGCCGCGAaGGuCGGa -3'
miRNA:   3'- -GUCGCGUAGaa-------------CG----CGGCGCUgUC-GCC- -5'
24972 3' -57.9 NC_005284.1 + 50165 0.67 0.524413
Target:  5'- -uGCGCAgUCgUUGCGCaaCGCGAuCGGCGc -3'
miRNA:   3'- guCGCGU-AG-AACGCG--GCGCU-GUCGCc -5'
24972 3' -57.9 NC_005284.1 + 10658 0.67 0.524413
Target:  5'- -uGCGCGaggaaCUggugcGCGCCGCGggcgcgaucgacACGGCGGg -3'
miRNA:   3'- guCGCGUa----GAa----CGCGGCGC------------UGUCGCC- -5'
24972 3' -57.9 NC_005284.1 + 35823 0.67 0.524413
Target:  5'- -cGCGUagAUCgUUGCGUCGCcGGCcaucGGCGGg -3'
miRNA:   3'- guCGCG--UAG-AACGCGGCG-CUG----UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.