miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25032 3' -50.2 NC_005336.1 + 96477 0.66 0.996194
Target:  5'- cGGUCGAUgaAGaccgCGAUcCGCcCGCUCUCg -3'
miRNA:   3'- -CCAGUUG--UCa---GCUGaGUGaGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 7219 0.66 0.996194
Target:  5'- --gCGACAGUcCGGC-CACUCGCggUCg -3'
miRNA:   3'- ccaGUUGUCA-GCUGaGUGAGUGagAG- -5'
25032 3' -50.2 NC_005336.1 + 136832 0.66 0.996194
Target:  5'- aGGU--ACcGUUGACUCACgCACUCa- -3'
miRNA:   3'- -CCAguUGuCAGCUGAGUGaGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 136832 0.66 0.996194
Target:  5'- aGGU--ACcGUUGACUCACgCACUCa- -3'
miRNA:   3'- -CCAguUGuCAGCUGAGUGaGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 107696 0.66 0.996194
Target:  5'- --gCAcuACAGUCGACaUugUCACUgUCu -3'
miRNA:   3'- ccaGU--UGUCAGCUGaGugAGUGAgAG- -5'
25032 3' -50.2 NC_005336.1 + 137701 0.66 0.995323
Target:  5'- aGUCGACgAG-CGaaccaccacucaucGCUCGCUCGCUCa- -3'
miRNA:   3'- cCAGUUG-UCaGC--------------UGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137701 0.66 0.995323
Target:  5'- aGUCGACgAG-CGaaccaccacucaucGCUCGCUCGCUCa- -3'
miRNA:   3'- cCAGUUG-UCaGC--------------UGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137768 0.67 0.991929
Target:  5'- aGUUAACAGguuaaUCACUCACUCa- -3'
miRNA:   3'- cCAGUUGUCagcugAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137768 0.67 0.991929
Target:  5'- aGUUAACAGguuaaUCACUCACUCa- -3'
miRNA:   3'- cCAGUUGUCagcugAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 47278 0.67 0.990737
Target:  5'- cGG-CAGCGgacuggagauGUCGucCUC-CUCGCUCUCg -3'
miRNA:   3'- -CCaGUUGU----------CAGCu-GAGuGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 77610 0.67 0.989412
Target:  5'- aGGcCAcgaaGCGGUCcACaaACUCGCUCUCu -3'
miRNA:   3'- -CCaGU----UGUCAGcUGagUGAGUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 99291 0.67 0.989271
Target:  5'- aGUgGACGGUCGACgacgccgUCACagacCACUCUUc -3'
miRNA:   3'- cCAgUUGUCAGCUG-------AGUGa---GUGAGAG- -5'
25032 3' -50.2 NC_005336.1 + 138027 0.67 0.987942
Target:  5'- aGUCGACAcUCGcucGC-CACUCACUCg- -3'
miRNA:   3'- cCAGUUGUcAGC---UGaGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 138027 0.67 0.987942
Target:  5'- aGUCGACAcUCGcucGC-CACUCACUCg- -3'
miRNA:   3'- cCAGUUGUcAGC---UGaGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 17235 0.67 0.987942
Target:  5'- cGG-CAGCAGUCGcACUCAUcgccCACUUguUCg -3'
miRNA:   3'- -CCaGUUGUCAGC-UGAGUGa---GUGAG--AG- -5'
25032 3' -50.2 NC_005336.1 + 138178 0.67 0.98632
Target:  5'- aGagAACGG-CGaACUCGCUCGCUCg- -3'
miRNA:   3'- cCagUUGUCaGC-UGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 138178 0.67 0.98632
Target:  5'- aGagAACGG-CGaACUCGCUCGCUCg- -3'
miRNA:   3'- cCagUUGUCaGC-UGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137488 0.68 0.984535
Target:  5'- aGUUAGCgAGUUaaccACUCGCUCACUCa- -3'
miRNA:   3'- cCAGUUG-UCAGc---UGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 137488 0.68 0.984535
Target:  5'- aGUUAGCgAGUUaaccACUCGCUCACUCa- -3'
miRNA:   3'- cCAGUUG-UCAGc---UGAGUGAGUGAGag -5'
25032 3' -50.2 NC_005336.1 + 1779 0.68 0.982579
Target:  5'- uGGcgagCGAguGUCGACUCGuuaucguguuCUCuACUCUCu -3'
miRNA:   3'- -CCa---GUUguCAGCUGAGU----------GAG-UGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.