Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25032 | 3' | -50.2 | NC_005336.1 | + | 138178 | 0.67 | 0.98632 |
Target: 5'- aGagAACGG-CGaACUCGCUCGCUCg- -3' miRNA: 3'- cCagUUGUCaGC-UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 138178 | 0.67 | 0.98632 |
Target: 5'- aGagAACGG-CGaACUCGCUCGCUCg- -3' miRNA: 3'- cCagUUGUCaGC-UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 138027 | 0.67 | 0.987942 |
Target: 5'- aGUCGACAcUCGcucGC-CACUCACUCg- -3' miRNA: 3'- cCAGUUGUcAGC---UGaGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 138027 | 0.67 | 0.987942 |
Target: 5'- aGUCGACAcUCGcucGC-CACUCACUCg- -3' miRNA: 3'- cCAGUUGUcAGC---UGaGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137972 | 0.89 | 0.166518 |
Target: 5'- aGUCGACAGUCGACacUCACUCGCUCg- -3' miRNA: 3'- cCAGUUGUCAGCUG--AGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137972 | 0.89 | 0.166518 |
Target: 5'- aGUCGACAGUCGACacUCACUCGCUCg- -3' miRNA: 3'- cCAGUUGUCAGCUG--AGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137840 | 0.68 | 0.980442 |
Target: 5'- aGUUAACAGguuaaucACUCACUCACaCUCa -3' miRNA: 3'- cCAGUUGUCagc----UGAGUGAGUGaGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137840 | 0.68 | 0.980442 |
Target: 5'- aGUUAACAGguuaaucACUCACUCACaCUCa -3' miRNA: 3'- cCAGUUGUCagc----UGAGUGAGUGaGAG- -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137768 | 0.67 | 0.991929 |
Target: 5'- aGUUAACAGguuaaUCACUCACUCa- -3' miRNA: 3'- cCAGUUGUCagcugAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137768 | 0.67 | 0.991929 |
Target: 5'- aGUUAACAGguuaaUCACUCACUCa- -3' miRNA: 3'- cCAGUUGUCagcugAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137701 | 0.66 | 0.995323 |
Target: 5'- aGUCGACgAG-CGaaccaccacucaucGCUCGCUCGCUCa- -3' miRNA: 3'- cCAGUUG-UCaGC--------------UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137701 | 0.66 | 0.995323 |
Target: 5'- aGUCGACgAG-CGaaccaccacucaucGCUCGCUCGCUCa- -3' miRNA: 3'- cCAGUUG-UCaGC--------------UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137488 | 0.68 | 0.984535 |
Target: 5'- aGUUAGCgAGUUaaccACUCGCUCACUCa- -3' miRNA: 3'- cCAGUUG-UCAGc---UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137488 | 0.68 | 0.984535 |
Target: 5'- aGUUAGCgAGUUaaccACUCGCUCACUCa- -3' miRNA: 3'- cCAGUUG-UCAGc---UGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137315 | 0.75 | 0.739742 |
Target: 5'- aGagAACAGUCaACUCGCUCACUCa- -3' miRNA: 3'- cCagUUGUCAGcUGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137315 | 0.75 | 0.739742 |
Target: 5'- aGagAACAGUCaACUCGCUCACUCa- -3' miRNA: 3'- cCagUUGUCAGcUGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137249 | 0.88 | 0.194865 |
Target: 5'- aGUCGACAGUCcACUCACUCACUCa- -3' miRNA: 3'- cCAGUUGUCAGcUGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137249 | 0.88 | 0.194865 |
Target: 5'- aGUCGACAGUCcACUCACUCACUCa- -3' miRNA: 3'- cCAGUUGUCAGcUGAGUGAGUGAGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137190 | 0.74 | 0.80774 |
Target: 5'- aGUUAACGGUCGAC-CACUCGCcCg- -3' miRNA: 3'- cCAGUUGUCAGCUGaGUGAGUGaGag -5' |
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25032 | 3' | -50.2 | NC_005336.1 | + | 137190 | 0.74 | 0.80774 |
Target: 5'- aGUUAACGGUCGAC-CACUCGCcCg- -3' miRNA: 3'- cCAGUUGUCAGCUGaGUGAGUGaGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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