miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 5' -62.4 NC_005336.1 + 74044 0.66 0.570292
Target:  5'- gGCuGuGCUGCgcgaGGCGCGCUCcggaCGCg- -3'
miRNA:   3'- -CGuC-CGACGag--CCGCGCGAGc---GCGac -5'
25033 5' -62.4 NC_005336.1 + 49720 0.66 0.560506
Target:  5'- aGCAGGcCUGC--GGCaG-GCUCGCGCg- -3'
miRNA:   3'- -CGUCC-GACGagCCG-CgCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 64201 0.66 0.548825
Target:  5'- aCAGGCUGCUguucgacCGGCugagcgaGCGC-CGCGUg- -3'
miRNA:   3'- cGUCCGACGA-------GCCG-------CGCGaGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 77479 0.66 0.580119
Target:  5'- cGCGGGCgGCUaCuGCaGCagcagcuugaGCUUGCGCUGg -3'
miRNA:   3'- -CGUCCGaCGA-GcCG-CG----------CGAGCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 99442 0.66 0.564415
Target:  5'- cGCGGcGCUGCgugCGGagggcgacgucgcuCGCGgcacugcgguauguCUCGCGCUGc -3'
miRNA:   3'- -CGUC-CGACGa--GCC--------------GCGC--------------GAGCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 68292 0.66 0.550767
Target:  5'- aGCc-GCUGCgggCGuGCGUGCUgGCGCg- -3'
miRNA:   3'- -CGucCGACGa--GC-CGCGCGAgCGCGac -5'
25033 5' -62.4 NC_005336.1 + 131333 0.66 0.580119
Target:  5'- cGCGcGCUGCuUCGGCGCgGCgccaGCGUg- -3'
miRNA:   3'- -CGUcCGACG-AGCCGCG-CGag--CGCGac -5'
25033 5' -62.4 NC_005336.1 + 123320 0.66 0.560506
Target:  5'- cGCGGGCUcaucgaGCgCGGCGCGUgcgUGgGCg- -3'
miRNA:   3'- -CGUCCGA------CGaGCCGCGCGa--GCgCGac -5'
25033 5' -62.4 NC_005336.1 + 77158 0.66 0.550767
Target:  5'- aGCGGGC-GCUCgcagaccgGGCGCGagagCGCGUg- -3'
miRNA:   3'- -CGUCCGaCGAG--------CCGCGCga--GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 89206 0.66 0.560506
Target:  5'- cGCucGCUGCUCacgaccauGGCGCGCgCGCGa-- -3'
miRNA:   3'- -CGucCGACGAG--------CCGCGCGaGCGCgac -5'
25033 5' -62.4 NC_005336.1 + 25468 0.66 0.560506
Target:  5'- aGCGGGUUGUcCGGCGCcGC-CGCcaGCg- -3'
miRNA:   3'- -CGUCCGACGaGCCGCG-CGaGCG--CGac -5'
25033 5' -62.4 NC_005336.1 + 125382 0.66 0.569312
Target:  5'- cGCuGGCggagauuUGCcgCGGCGCcacagugguGCUCGCGCc- -3'
miRNA:   3'- -CGuCCG-------ACGa-GCCGCG---------CGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 101422 0.66 0.550767
Target:  5'- cGguGGCggacgcgGC-CGcGCGCGUggUCGCGCUc -3'
miRNA:   3'- -CguCCGa------CGaGC-CGCGCG--AGCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 133359 0.66 0.570292
Target:  5'- cGgAGGCgGCggCGGCGCuggGCUuCGCGCc- -3'
miRNA:   3'- -CgUCCGaCGa-GCCGCG---CGA-GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 18742 0.66 0.570292
Target:  5'- cGCAGGC--CUCGGCGaCGCgucuggUGUGCa- -3'
miRNA:   3'- -CGUCCGacGAGCCGC-GCGa-----GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 117433 0.66 0.550767
Target:  5'- cCGGG-UGUUCcuGGCgGUGUUCGCGCUGu -3'
miRNA:   3'- cGUCCgACGAG--CCG-CGCGAGCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 83181 0.66 0.580119
Target:  5'- cGCGGcGCUGCcggacUGGCGCGagccagggCGCGCg- -3'
miRNA:   3'- -CGUC-CGACGa----GCCGCGCga------GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 62319 0.66 0.564415
Target:  5'- gGCGGGCUccGCggcgucgucgaaggCGGUGCGCagaucgcuggUGCGCUGc -3'
miRNA:   3'- -CGUCCGA--CGa-------------GCCGCGCGa---------GCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 127840 0.66 0.560506
Target:  5'- cGCGcGGCUGCUggccgCGG-GCGCggacccCGCGCUc -3'
miRNA:   3'- -CGU-CCGACGA-----GCCgCGCGa-----GCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 37212 0.66 0.560506
Target:  5'- cGUAGcGCcGCcCGGCGCGCUCGauCUu -3'
miRNA:   3'- -CGUC-CGaCGaGCCGCGCGAGCgcGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.