miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 5' -62.4 NC_005336.1 + 3932 0.74 0.216271
Target:  5'- aGCGGGCcGCcgCGGCGCaGCgccgCGCGCa- -3'
miRNA:   3'- -CGUCCGaCGa-GCCGCG-CGa---GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 48112 0.75 0.16559
Target:  5'- cGC-GGCUGCgcaugCGGUGCGCcggCGCGCUu -3'
miRNA:   3'- -CGuCCGACGa----GCCGCGCGa--GCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 8893 0.75 0.178248
Target:  5'- cCAGGCaGCgggCcGCGCGCUCGCGCa- -3'
miRNA:   3'- cGUCCGaCGa--GcCGCGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 54580 0.75 0.182655
Target:  5'- uGCGGGCUGCU----GCGCUCGCGCg- -3'
miRNA:   3'- -CGUCCGACGAgccgCGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 42611 0.75 0.187158
Target:  5'- -gAGGcCUGUguggaCGGCGUGCUCGCGCg- -3'
miRNA:   3'- cgUCC-GACGa----GCCGCGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 36257 0.75 0.187158
Target:  5'- cGgAGGCcgcGCUCGGCGCGaCUaCGCGCa- -3'
miRNA:   3'- -CgUCCGa--CGAGCCGCGC-GA-GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 75686 0.75 0.187158
Target:  5'- cGCAGGCagacCUCGGUguacuugcagcuGCGCUCGCGCa- -3'
miRNA:   3'- -CGUCCGac--GAGCCG------------CGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 75519 0.75 0.188986
Target:  5'- cGCAGGCgUugaaggcguccacgaGCUUGGCGCGCgugUCGCGCg- -3'
miRNA:   3'- -CGUCCG-A---------------CGAGCCGCGCG---AGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 48216 0.74 0.196458
Target:  5'- cGCGuGGaaacGCUCGGCGUGUUgGCGCUGu -3'
miRNA:   3'- -CGU-CCga--CGAGCCGCGCGAgCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 15022 0.76 0.14997
Target:  5'- cGCGGGCgGCgUCGGCGCGCgccccgggcgcCGCGCg- -3'
miRNA:   3'- -CGUCCGaCG-AGCCGCGCGa----------GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 135954 0.76 0.146279
Target:  5'- cGCGGGC-GCUCGGCG-GCg-GCGCUGc -3'
miRNA:   3'- -CGUCCGaCGAGCCGCgCGagCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 100401 0.77 0.132334
Target:  5'- cGCGGGCUGCUcuacgacgggCGGCGCcgcacgcgcguGCUCGCGgUGc -3'
miRNA:   3'- -CGUCCGACGA----------GCCGCG-----------CGAGCGCgAC- -5'
25033 5' -62.4 NC_005336.1 + 136263 0.8 0.077326
Target:  5'- gGCGGGCUucgcGCUCGGCGCGCUCuuccgccccgcgGCGCc- -3'
miRNA:   3'- -CGUCCGA----CGAGCCGCGCGAG------------CGCGac -5'
25033 5' -62.4 NC_005336.1 + 52126 0.8 0.083575
Target:  5'- cGCAGGCUGCggagCGcGCGCGCuacaUCGCGCc- -3'
miRNA:   3'- -CGUCCGACGa---GC-CGCGCG----AGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 77686 0.79 0.085763
Target:  5'- cCAGGCggcgGcCUUGGUGCGCUCGCGCa- -3'
miRNA:   3'- cGUCCGa---C-GAGCCGCGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 126761 0.79 0.097295
Target:  5'- gGCAGGCgucgguaugcugcUGCUCGGCGUGCgCGUGUUGc -3'
miRNA:   3'- -CGUCCG-------------ACGAGCCGCGCGaGCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 74855 0.79 0.097545
Target:  5'- cGCGcGCUGCgCGGCGCGCcUGCGCUGc -3'
miRNA:   3'- -CGUcCGACGaGCCGCGCGaGCGCGAC- -5'
25033 5' -62.4 NC_005336.1 + 97817 0.78 0.108057
Target:  5'- cGCGGGCgagGCgCGGCGCguGCUCGUGCUc -3'
miRNA:   3'- -CGUCCGa--CGaGCCGCG--CGAGCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 80606 0.77 0.12269
Target:  5'- cCGGGauCUGCgCGGCGCGCUUGCGCg- -3'
miRNA:   3'- cGUCC--GACGaGCCGCGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 51108 0.77 0.132334
Target:  5'- aCAGGgaGgUCGGCuccuCGCUCGCGCUGg -3'
miRNA:   3'- cGUCCgaCgAGCCGc---GCGAGCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.