Results 1 - 20 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25033 | 5' | -62.4 | NC_005336.1 | + | 136231 | 1.1 | 0.000514 |
Target: 5'- cGCAGGCUGCUCGGCGCGCUCGCGCUGg -3' miRNA: 3'- -CGUCCGACGAGCCGCGCGAGCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 136231 | 1.1 | 0.000514 |
Target: 5'- cGCAGGCUGCUCGGCGCGCUCGCGCUGg -3' miRNA: 3'- -CGUCCGACGAGCCGCGCGAGCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 80970 | 0.91 | 0.013078 |
Target: 5'- cGCAGGCUGCgcagGGCGCGCUCGCGCg- -3' miRNA: 3'- -CGUCCGACGag--CCGCGCGAGCGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 136263 | 0.8 | 0.077326 |
Target: 5'- gGCGGGCUucgcGCUCGGCGCGCUCuuccgccccgcgGCGCc- -3' miRNA: 3'- -CGUCCGA----CGAGCCGCGCGAG------------CGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 136263 | 0.8 | 0.077326 |
Target: 5'- gGCGGGCUucgcGCUCGGCGCGCUCuuccgccccgcgGCGCc- -3' miRNA: 3'- -CGUCCGA----CGAGCCGCGCGAG------------CGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 52126 | 0.8 | 0.083575 |
Target: 5'- cGCAGGCUGCggagCGcGCGCGCuacaUCGCGCc- -3' miRNA: 3'- -CGUCCGACGa---GC-CGCGCG----AGCGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 130144 | 0.8 | 0.083575 |
Target: 5'- cGCAGGCgcuCUCGGacgcaGCGCUCGCGCa- -3' miRNA: 3'- -CGUCCGac-GAGCCg----CGCGAGCGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 77686 | 0.79 | 0.085763 |
Target: 5'- cCAGGCggcgGcCUUGGUGCGCUCGCGCa- -3' miRNA: 3'- cGUCCGa---C-GAGCCGCGCGAGCGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 126761 | 0.79 | 0.097295 |
Target: 5'- gGCAGGCgucgguaugcugcUGCUCGGCGUGCgCGUGUUGc -3' miRNA: 3'- -CGUCCG-------------ACGAGCCGCGCGaGCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 86327 | 0.79 | 0.097545 |
Target: 5'- aGCGGGaa-CUUGGUGUGCUCGCGCUGc -3' miRNA: 3'- -CGUCCgacGAGCCGCGCGAGCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 74855 | 0.79 | 0.097545 |
Target: 5'- cGCGcGCUGCgCGGCGCGCcUGCGCUGc -3' miRNA: 3'- -CGUcCGACGaGCCGCGCGaGCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 97817 | 0.78 | 0.108057 |
Target: 5'- cGCGGGCgagGCgCGGCGCguGCUCGUGCUc -3' miRNA: 3'- -CGUCCGa--CGaGCCGCG--CGAGCGCGAc -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 80606 | 0.77 | 0.12269 |
Target: 5'- cCGGGauCUGCgCGGCGCGCUUGCGCg- -3' miRNA: 3'- cGUCC--GACGaGCCGCGCGAGCGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 51108 | 0.77 | 0.132334 |
Target: 5'- aCAGGgaGgUCGGCuccuCGCUCGCGCUGg -3' miRNA: 3'- cGUCCgaCgAGCCGc---GCGAGCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 100401 | 0.77 | 0.132334 |
Target: 5'- cGCGGGCUGCUcuacgacgggCGGCGCcgcacgcgcguGCUCGCGgUGc -3' miRNA: 3'- -CGUCCGACGA----------GCCGCG-----------CGAGCGCgAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 130449 | 0.76 | 0.142672 |
Target: 5'- cGCGGGCUGCUCGcgauCGCGCUcugcgaggucaCGCGCa- -3' miRNA: 3'- -CGUCCGACGAGCc---GCGCGA-----------GCGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 135954 | 0.76 | 0.146279 |
Target: 5'- cGCGGGC-GCUCGGCG-GCg-GCGCUGc -3' miRNA: 3'- -CGUCCGaCGAGCCGCgCGagCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 135954 | 0.76 | 0.146279 |
Target: 5'- cGCGGGC-GCUCGGCG-GCg-GCGCUGc -3' miRNA: 3'- -CGUCCGaCGAGCCGCgCGagCGCGAC- -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 15022 | 0.76 | 0.14997 |
Target: 5'- cGCGGGCgGCgUCGGCGCGCgccccgggcgcCGCGCg- -3' miRNA: 3'- -CGUCCGaCG-AGCCGCGCGa----------GCGCGac -5' |
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25033 | 5' | -62.4 | NC_005336.1 | + | 11707 | 0.75 | 0.161553 |
Target: 5'- cGCAGGC-GCggaucgCGGCcgcguGCGCUCGCGCg- -3' miRNA: 3'- -CGUCCGaCGa-----GCCG-----CGCGAGCGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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