miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 5' -62.4 NC_005336.1 + 3808 0.66 0.609787
Target:  5'- cGCGGccagccGCUGCcCGcGCGCGCccgccgCGCGCa- -3'
miRNA:   3'- -CGUC------CGACGaGC-CGCGCGa-----GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 3808 0.66 0.609787
Target:  5'- cGCGGccagccGCUGCcCGcGCGCGCccgccgCGCGCa- -3'
miRNA:   3'- -CGUC------CGACGaGC-CGCGCGa-----GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 3932 0.74 0.216271
Target:  5'- aGCGGGCcGCcgCGGCGCaGCgccgCGCGCa- -3'
miRNA:   3'- -CGUCCGaCGa-GCCGCG-CGa---GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 5809 0.73 0.249177
Target:  5'- cGCAGGCggccgagGC-CGGCGcCGCgCGCGCg- -3'
miRNA:   3'- -CGUCCGa------CGaGCCGC-GCGaGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 6716 0.7 0.334495
Target:  5'- cGCAGGC-GUUUGGguuCGCGC-CGCGCUc -3'
miRNA:   3'- -CGUCCGaCGAGCC---GCGCGaGCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 8893 0.75 0.178248
Target:  5'- cCAGGCaGCgggCcGCGCGCUCGCGCa- -3'
miRNA:   3'- cGUCCGaCGa--GcCGCGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 9303 0.66 0.589982
Target:  5'- aGCAGGCUcCgCGGCGgGCgCGCGg-- -3'
miRNA:   3'- -CGUCCGAcGaGCCGCgCGaGCGCgac -5'
25033 5' -62.4 NC_005336.1 + 9435 0.69 0.387786
Target:  5'- uCGGGCUcgccgagaaccucGCUCGGCGCGC--GCGCc- -3'
miRNA:   3'- cGUCCGA-------------CGAGCCGCGCGagCGCGac -5'
25033 5' -62.4 NC_005336.1 + 10390 0.73 0.237771
Target:  5'- gGCGGGCUGUcuucgaaggCGGCGCggaGCUCGgGCUc -3'
miRNA:   3'- -CGUCCGACGa--------GCCGCG---CGAGCgCGAc -5'
25033 5' -62.4 NC_005336.1 + 11707 0.75 0.161553
Target:  5'- cGCAGGC-GCggaucgCGGCcgcguGCGCUCGCGCg- -3'
miRNA:   3'- -CGUCCGaCGa-----GCCG-----CGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 11799 0.73 0.237771
Target:  5'- cGCGuGGCcgcGCUCGGCGUGCgCGCGUUc -3'
miRNA:   3'- -CGU-CCGa--CGAGCCGCGCGaGCGCGAc -5'
25033 5' -62.4 NC_005336.1 + 11871 0.71 0.292672
Target:  5'- gGCAGcGCUGUgcgcaCGGCGCGCgCGCaGUUGu -3'
miRNA:   3'- -CGUC-CGACGa----GCCGCGCGaGCG-CGAC- -5'
25033 5' -62.4 NC_005336.1 + 12624 0.7 0.372566
Target:  5'- gGCGGGCUGgaUcGCGCGC-CGCGUg- -3'
miRNA:   3'- -CGUCCGACgaGcCGCGCGaGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 12660 0.66 0.609787
Target:  5'- cGCGGcGCUGCgcCGGgGgGUgUCGCGCg- -3'
miRNA:   3'- -CGUC-CGACGa-GCCgCgCG-AGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 12734 0.66 0.603837
Target:  5'- aGCGGGUugccgcgcaugagcaUGUgcagCGGCGCGUaccCGCGCg- -3'
miRNA:   3'- -CGUCCG---------------ACGa---GCCGCGCGa--GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 12761 0.67 0.502958
Target:  5'- aGCAGGUggucgcGCUCcuGCGCGacguCUCGCGCg- -3'
miRNA:   3'- -CGUCCGa-----CGAGc-CGCGC----GAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 14910 0.7 0.36472
Target:  5'- cGCAguuGGCUGC-CcGCGCGC-CGCGCg- -3'
miRNA:   3'- -CGU---CCGACGaGcCGCGCGaGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 15022 0.76 0.14997
Target:  5'- cGCGGGCgGCgUCGGCGCGCgccccgggcgcCGCGCg- -3'
miRNA:   3'- -CGUCCGaCG-AGCCGCGCGa----------GCGCGac -5'
25033 5' -62.4 NC_005336.1 + 15078 0.71 0.292672
Target:  5'- uGC-GGCUGUccaCGuGCGCGUUCGCGCa- -3'
miRNA:   3'- -CGuCCGACGa--GC-CGCGCGAGCGCGac -5'
25033 5' -62.4 NC_005336.1 + 15114 0.66 0.609787
Target:  5'- gGCAcuGGCUgGCcgCGGaCG-GCUCGCGCg- -3'
miRNA:   3'- -CGU--CCGA-CGa-GCC-GCgCGAGCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.