miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 136608 0.68 0.646619
Target:  5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3'
miRNA:   3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 136608 0.68 0.646619
Target:  5'- -gCGGccGCGCUCGGAguGGCUGCgGCaGCUg -3'
miRNA:   3'- aaGUU--UGCGAGCCU--CCGGCG-CGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 136232 0.66 0.766661
Target:  5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3'
miRNA:   3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5'
25035 5' -58.6 NC_005336.1 + 136232 0.66 0.766661
Target:  5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3'
miRNA:   3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 136015 0.67 0.667155
Target:  5'- ---cGGCGCUggCGGccgcGGGCCGCGCgGCg -3'
miRNA:   3'- aaguUUGCGA--GCC----UCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 135955 0.84 0.063099
Target:  5'- -gCGGGCGCUCGGcGGCgGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGAGCCuCCGgCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 135955 0.84 0.063099
Target:  5'- -gCGGGCGCUCGGcGGCgGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGAGCCuCCGgCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 135892 0.69 0.564641
Target:  5'- --uGGACGCgCGGcuGCCGCuGCUGCUg -3'
miRNA:   3'- aagUUUGCGaGCCucCGGCG-CGACGA- -5'
25035 5' -58.6 NC_005336.1 + 135889 0.69 0.554536
Target:  5'- gUCuGGACGCgCGGcuGCCGCuGCUGCUg -3'
miRNA:   3'- aAG-UUUGCGaGCCucCGGCG-CGACGA- -5'
25035 5' -58.6 NC_005336.1 + 135825 0.72 0.41226
Target:  5'- -cCGGACGCggCGGGgcggcugccgcuGGCgGCGCUGCUg -3'
miRNA:   3'- aaGUUUGCGa-GCCU------------CCGgCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 133966 0.68 0.626036
Target:  5'- cUUCcuGCGC-CGGcuGGCCGCGCgcgcgGCg -3'
miRNA:   3'- -AAGuuUGCGaGCCu-CCGGCGCGa----CGa -5'
25035 5' -58.6 NC_005336.1 + 133733 0.66 0.766661
Target:  5'- -gCGAGCGCUggCGGAcuacgcgaccguGGuCCGCGCgUGCg -3'
miRNA:   3'- aaGUUUGCGA--GCCU------------CC-GGCGCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 133656 1.05 0.002084
Target:  5'- gUUCAAACGCUCGGAGGCCGCGCUGCUg -3'
miRNA:   3'- -AAGUUUGCGAGCCUCCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 133348 0.66 0.727787
Target:  5'- cUCGAucuCGC-CGGAGGCgGCgGCgGCg -3'
miRNA:   3'- aAGUUu--GCGaGCCUCCGgCG-CGaCGa -5'
25035 5' -58.6 NC_005336.1 + 131973 0.69 0.534494
Target:  5'- aUCc-GCGCUacCGGAGGCCGUGC-GCc -3'
miRNA:   3'- aAGuuUGCGA--GCCUCCGGCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 131106 0.72 0.395011
Target:  5'- -gCAugcCGCUgCGGAGGCCGCGCgacgggGCc -3'
miRNA:   3'- aaGUuu-GCGA-GCCUCCGGCGCGa-----CGa -5'
25035 5' -58.6 NC_005336.1 + 130154 0.71 0.457342
Target:  5'- cUCGgacgcAGCGCUCGcGcaccAGGCCGCGCUcGCg -3'
miRNA:   3'- aAGU-----UUGCGAGC-C----UCCGGCGCGA-CGa -5'
25035 5' -58.6 NC_005336.1 + 130036 0.66 0.717836
Target:  5'- -aCAcuCGCUgGuGGGGCCGCuGCUGgCUg -3'
miRNA:   3'- aaGUuuGCGAgC-CUCCGGCG-CGAC-GA- -5'
25035 5' -58.6 NC_005336.1 + 128102 0.77 0.210291
Target:  5'- -gCGAuccGCGCcugcgaggCGGAGGUCGCGCUGCUg -3'
miRNA:   3'- aaGUU---UGCGa-------GCCUCCGGCGCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.