miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25036 3' -62.3 NC_005336.1 + 136602 0.66 0.633788
Target:  5'- gGCCGcGCgGCCGcGCUCGgagUGGCUgCGGc -3'
miRNA:   3'- -CGGC-CGaUGGC-CGAGUg--GCCGAgGCC- -5'
25036 3' -62.3 NC_005336.1 + 136602 0.66 0.633788
Target:  5'- gGCCGcGCgGCCGcGCUCGgagUGGCUgCGGc -3'
miRNA:   3'- -CGGC-CGaUGGC-CGAGUg--GCCGAgGCC- -5'
25036 3' -62.3 NC_005336.1 + 136301 0.68 0.537322
Target:  5'- cGCCGccGCUGCCGGC-CGCCuucgcggaggcgGGCcCCGu -3'
miRNA:   3'- -CGGC--CGAUGGCCGaGUGG------------CCGaGGCc -5'
25036 3' -62.3 NC_005336.1 + 136301 0.68 0.537322
Target:  5'- cGCCGccGCUGCCGGC-CGCCuucgcggaggcgGGCcCCGu -3'
miRNA:   3'- -CGGC--CGAUGGCCGaGUGG------------CCGaGGCc -5'
25036 3' -62.3 NC_005336.1 + 136231 0.66 0.662993
Target:  5'- cGCaGGCUGCuCGGCgcgcucgCGCUGGUggCGGc -3'
miRNA:   3'- -CGgCCGAUG-GCCGa------GUGGCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 136231 0.66 0.662993
Target:  5'- cGCaGGCUGCuCGGCgcgcucgCGCUGGUggCGGc -3'
miRNA:   3'- -CGgCCGAUG-GCCGa------GUGGCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 136061 0.74 0.229013
Target:  5'- cGCCGGCUucccucACCGcGCcCGCCGcGCcCCGGg -3'
miRNA:   3'- -CGGCCGA------UGGC-CGaGUGGC-CGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 136061 0.74 0.229013
Target:  5'- cGCCGGCUucccucACCGcGCcCGCCGcGCcCCGGg -3'
miRNA:   3'- -CGGCCGA------UGGC-CGaGUGGC-CGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 135896 0.68 0.509256
Target:  5'- cGCgCGGCUGCCGcugcuGCUgGCgCGGCg-CGGg -3'
miRNA:   3'- -CG-GCCGAUGGC-----CGAgUG-GCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 135896 0.68 0.509256
Target:  5'- cGCgCGGCUGCCGcugcuGCUgGCgCGGCg-CGGg -3'
miRNA:   3'- -CG-GCCGAUGGC-----CGAgUG-GCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 133973 0.76 0.172418
Target:  5'- cGCCGGCUgGCCGcGCgcgcggCGCCGGCcUCGGc -3'
miRNA:   3'- -CGGCCGA-UGGC-CGa-----GUGGCCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 133946 0.68 0.509256
Target:  5'- -gCGGCUGCgCGuCUCGCUGGCUgagcagaucgCCGGc -3'
miRNA:   3'- cgGCCGAUG-GCcGAGUGGCCGA----------GGCC- -5'
25036 3' -62.3 NC_005336.1 + 133576 0.69 0.47284
Target:  5'- -aCGGCcGCCGuGCUCgcgcGCCGGCcgCCGa -3'
miRNA:   3'- cgGCCGaUGGC-CGAG----UGGCCGa-GGCc -5'
25036 3' -62.3 NC_005336.1 + 133473 0.7 0.420822
Target:  5'- cGCCuGCUGCCGGCUggugcgcaugggCGCgGaGCUCgGGc -3'
miRNA:   3'- -CGGcCGAUGGCCGA------------GUGgC-CGAGgCC- -5'
25036 3' -62.3 NC_005336.1 + 133124 0.7 0.420822
Target:  5'- cGCC-GCUGgCGGCgCugCugGGCUCCGGc -3'
miRNA:   3'- -CGGcCGAUgGCCGaGugG--CCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 132315 1.11 0.000652
Target:  5'- cGCCGGCUACCGGCUCACCGGCUCCGGc -3'
miRNA:   3'- -CGGCCGAUGGCCGAGUGGCCGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 131964 0.66 0.643534
Target:  5'- cGCCGGCgcauCCGcGCU-ACCGGaggCCGu -3'
miRNA:   3'- -CGGCCGau--GGC-CGAgUGGCCga-GGCc -5'
25036 3' -62.3 NC_005336.1 + 131098 0.66 0.633788
Target:  5'- cGCCGGCUGCauGCcgCugCGGaggCCGc -3'
miRNA:   3'- -CGGCCGAUGgcCGa-GugGCCga-GGCc -5'
25036 3' -62.3 NC_005336.1 + 130136 0.67 0.585176
Target:  5'- cGCgCGuGCcGCCGGCUgAUCGcGCUUgGGg -3'
miRNA:   3'- -CG-GC-CGaUGGCCGAgUGGC-CGAGgCC- -5'
25036 3' -62.3 NC_005336.1 + 130050 0.67 0.604572
Target:  5'- gGCC-GCUGCUGGCU-GCCGGCgcgagCgUGGa -3'
miRNA:   3'- -CGGcCGAUGGCCGAgUGGCCGa----G-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.