miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 3' -56.5 NC_005336.1 + 9636 0.66 0.842017
Target:  5'- cGAgCGCgGCcugguGCGCGAGCgcuGCGUCc -3'
miRNA:   3'- aCUgGCGgUG-----CGCGCUCGaguUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 99444 0.66 0.842017
Target:  5'- cGG-CGCUGCGUGCGgAGggCGACGUCg -3'
miRNA:   3'- aCUgGCGGUGCGCGC-UCgaGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 71420 0.66 0.857969
Target:  5'- -cACUGCCGCGUGgcCGAGCUgGugGUg -3'
miRNA:   3'- acUGGCGGUGCGC--GCUCGAgUugUAg -5'
25039 3' -56.5 NC_005336.1 + 124657 0.66 0.850094
Target:  5'- cGACCGCgGCugcgcuggaaaGCGCGGuGCUgcggcccgCGGCGUCg -3'
miRNA:   3'- aCUGGCGgUG-----------CGCGCU-CGA--------GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 113041 0.66 0.850094
Target:  5'- cGGCC-CCA-GCGCGcAGUUCAugcuGCGUCu -3'
miRNA:   3'- aCUGGcGGUgCGCGC-UCGAGU----UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 109423 0.66 0.850094
Target:  5'- aGGCCGCCuugaGCGUGCGcagcAGCUCcuCGg- -3'
miRNA:   3'- aCUGGCGG----UGCGCGC----UCGAGuuGUag -5'
25039 3' -56.5 NC_005336.1 + 89145 0.66 0.842017
Target:  5'- cGACC-UCGCGCGCGAgaacccgcucucGCUCGAUg-- -3'
miRNA:   3'- aCUGGcGGUGCGCGCU------------CGAGUUGuag -5'
25039 3' -56.5 NC_005336.1 + 52163 0.66 0.842017
Target:  5'- cGAuCUGCC-CGCGCuGGGggCAAUAUCg -3'
miRNA:   3'- aCU-GGCGGuGCGCG-CUCgaGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 92692 0.66 0.857969
Target:  5'- aGGCCGUCGuggaGCGgGAGCcgguUCAgACGUCg -3'
miRNA:   3'- aCUGGCGGUg---CGCgCUCG----AGU-UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 28251 0.66 0.850094
Target:  5'- cGGCCGCgCgGCGUGCGguGGCgcggCAcuGCGUCg -3'
miRNA:   3'- aCUGGCG-G-UGCGCGC--UCGa---GU--UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 60832 0.66 0.842017
Target:  5'- gGAacuCCGCgCGCGCGUcgGGGCUCucggcgGGCGUCu -3'
miRNA:   3'- aCU---GGCG-GUGCGCG--CUCGAG------UUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 100538 0.66 0.850094
Target:  5'- gGACgccgUGCC-CGCGCGgaagaAGCUCGACGa- -3'
miRNA:   3'- aCUG----GCGGuGCGCGC-----UCGAGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 38458 0.66 0.850094
Target:  5'- cGGCCGCCGCccCGUGGuGCUCAcggGCGg- -3'
miRNA:   3'- aCUGGCGGUGc-GCGCU-CGAGU---UGUag -5'
25039 3' -56.5 NC_005336.1 + 134451 0.66 0.850094
Target:  5'- cGGuuGCCGCaGUGaCGGuGCUCGGCGUg -3'
miRNA:   3'- aCUggCGGUG-CGC-GCU-CGAGUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 33168 0.66 0.850094
Target:  5'- cGAgCuCCAUGCGCGuGCUCuGCAc- -3'
miRNA:   3'- aCUgGcGGUGCGCGCuCGAGuUGUag -5'
25039 3' -56.5 NC_005336.1 + 18470 0.66 0.848494
Target:  5'- -cGCCGCCG-GCGCGAGCaccuccguggcgCAgaguGCGUCg -3'
miRNA:   3'- acUGGCGGUgCGCGCUCGa-----------GU----UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 123543 0.66 0.857969
Target:  5'- -uGCUGCUGCGCGCGGGCgcgGACc-- -3'
miRNA:   3'- acUGGCGGUGCGCGCUCGag-UUGuag -5'
25039 3' -56.5 NC_005336.1 + 133551 0.66 0.839556
Target:  5'- cGACCuuccgcuucgaggaGCCcguGCGCGCGGcGCUUAACGa- -3'
miRNA:   3'- aCUGG--------------CGG---UGCGCGCU-CGAGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 77258 0.66 0.850094
Target:  5'- cGAUgGCCuGCGCGCaGAGCggguuCGUCa -3'
miRNA:   3'- aCUGgCGG-UGCGCG-CUCGaguu-GUAG- -5'
25039 3' -56.5 NC_005336.1 + 100425 0.66 0.850094
Target:  5'- -cGCCG-CACGCGCGuGCUC-GCGg- -3'
miRNA:   3'- acUGGCgGUGCGCGCuCGAGuUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.