miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 3' -56.5 NC_005336.1 + 3416 0.69 0.692167
Target:  5'- cGACCGCCGCcaugugccGCGCGucGC-CGACgGUCa -3'
miRNA:   3'- aCUGGCGGUG--------CGCGCu-CGaGUUG-UAG- -5'
25039 3' -56.5 NC_005336.1 + 3416 0.69 0.692167
Target:  5'- cGACCGCCGCcaugugccGCGCGucGC-CGACgGUCa -3'
miRNA:   3'- aCUGGCGGUG--------CGCGCu-CGaGUUG-UAG- -5'
25039 3' -56.5 NC_005336.1 + 3558 0.7 0.630555
Target:  5'- -cGCCGCCACcaGCGCGAGCgcgccgagCAGCc-- -3'
miRNA:   3'- acUGGCGGUG--CGCGCUCGa-------GUUGuag -5'
25039 3' -56.5 NC_005336.1 + 3558 0.7 0.630555
Target:  5'- -cGCCGCCACcaGCGCGAGCgcgccgagCAGCc-- -3'
miRNA:   3'- acUGGCGGUG--CGCGCUCGa-------GUUGuag -5'
25039 3' -56.5 NC_005336.1 + 3752 0.68 0.751935
Target:  5'- gGGaaGCCgGCGCGCGGGCUgGGCu-- -3'
miRNA:   3'- aCUggCGG-UGCGCGCUCGAgUUGuag -5'
25039 3' -56.5 NC_005336.1 + 3752 0.68 0.751935
Target:  5'- gGGaaGCCgGCGCGCGGGCUgGGCu-- -3'
miRNA:   3'- aCUggCGG-UGCGCGCUCGAgUUGuag -5'
25039 3' -56.5 NC_005336.1 + 3795 0.69 0.692167
Target:  5'- cGGCCGCCAgCGcCGCG-GC-CAGCcgCu -3'
miRNA:   3'- aCUGGCGGU-GC-GCGCuCGaGUUGuaG- -5'
25039 3' -56.5 NC_005336.1 + 3795 0.69 0.692167
Target:  5'- cGGCCGCCAgCGcCGCG-GC-CAGCcgCu -3'
miRNA:   3'- aCUGGCGGU-GC-GCGCuCGaGUUGuaG- -5'
25039 3' -56.5 NC_005336.1 + 3831 0.69 0.73629
Target:  5'- cGcCCGCCGCGCGCagcagcgccgccgccGAGCgcccgCGcGCGUCg -3'
miRNA:   3'- aCuGGCGGUGCGCG---------------CUCGa----GU-UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 3831 0.69 0.73629
Target:  5'- cGcCCGCCGCGCGCagcagcgccgccgccGAGCgcccgCGcGCGUCg -3'
miRNA:   3'- aCuGGCGGUGCGCG---------------CUCGa----GU-UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 3935 0.7 0.64087
Target:  5'- gGGCCGCCGCG-GCGcAGCgccgcgcgCAGCAg- -3'
miRNA:   3'- aCUGGCGGUGCgCGC-UCGa-------GUUGUag -5'
25039 3' -56.5 NC_005336.1 + 4050 0.7 0.670712
Target:  5'- gGGgCGCCGCGCGCGGaccaaguGCUCcACGa- -3'
miRNA:   3'- aCUgGCGGUGCGCGCU-------CGAGuUGUag -5'
25039 3' -56.5 NC_005336.1 + 5449 0.68 0.742187
Target:  5'- cGGUCGCCacGCGCGCGAGCgcgcaguucgCGGCcgCg -3'
miRNA:   3'- aCUGGCGG--UGCGCGCUCGa---------GUUGuaG- -5'
25039 3' -56.5 NC_005336.1 + 5698 0.7 0.651177
Target:  5'- cGAgCGCCGCggaggccaGCGCGAGCgcgUCAgcuGCGUCc -3'
miRNA:   3'- aCUgGCGGUG--------CGCGCUCG---AGU---UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 5839 0.69 0.681973
Target:  5'- cGGCCaGCCggcgcaggaaGCGCGCGAGgaaGACGUCg -3'
miRNA:   3'- aCUGG-CGG----------UGCGCGCUCgagUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 5888 0.7 0.639838
Target:  5'- cGG-CGCCGCggGCGUGGGCUCAggauagugcggcgGCGUCg -3'
miRNA:   3'- aCUgGCGGUG--CGCGCUCGAGU-------------UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 5973 0.75 0.381417
Target:  5'- cGugCGCCGCGCGCaGAcGUccagCAGCGUCg -3'
miRNA:   3'- aCugGCGGUGCGCG-CU-CGa---GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 5974 0.69 0.712392
Target:  5'- cGcACCaGCCGCGCGgGuGCUCGAUg-- -3'
miRNA:   3'- aC-UGG-CGGUGCGCgCuCGAGUUGuag -5'
25039 3' -56.5 NC_005336.1 + 6219 0.74 0.40695
Target:  5'- cGGCgGCCgGCGCGCGAGCacggCGGcCGUCg -3'
miRNA:   3'- aCUGgCGG-UGCGCGCUCGa---GUU-GUAG- -5'
25039 3' -56.5 NC_005336.1 + 6299 0.8 0.191845
Target:  5'- aGGCCGCCACGUGCccGAGCUCcGCGc- -3'
miRNA:   3'- aCUGGCGGUGCGCG--CUCGAGuUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.