miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 3' -56.5 NC_005336.1 + 130674 1.09 0.002265
Target:  5'- aUGACCGCCACGCGCGAGCUCAACAUCc -3'
miRNA:   3'- -ACUGGCGGUGCGCGCUCGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 134164 0.84 0.105743
Target:  5'- -cGCCGUCGCGCGCGAGCUgGGCGUg -3'
miRNA:   3'- acUGGCGGUGCGCGCUCGAgUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 113334 0.8 0.187071
Target:  5'- cGGCCGUguuCGCGCGCGuGCUCAGCAc- -3'
miRNA:   3'- aCUGGCG---GUGCGCGCuCGAGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 6299 0.8 0.191845
Target:  5'- aGGCCGCCACGUGCccGAGCUCcGCGc- -3'
miRNA:   3'- aCUGGCGGUGCGCG--CUCGAGuUGUag -5'
25039 3' -56.5 NC_005336.1 + 116440 0.79 0.211494
Target:  5'- cGugCGCCGCagguaccGCGCGAGCUCGAUGUg -3'
miRNA:   3'- aCugGCGGUG-------CGCGCUCGAGUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 11682 0.79 0.222776
Target:  5'- cGcCCGCCGCGCGC-AGCUCGuccGCGUCc -3'
miRNA:   3'- aCuGGCGGUGCGCGcUCGAGU---UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 107847 0.77 0.27702
Target:  5'- -cGCUGuCCGCGUuCGAGCUCGACAUCa -3'
miRNA:   3'- acUGGC-GGUGCGcGCUCGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 104911 0.77 0.283659
Target:  5'- gGGCCGCCGC-CGCG-GCggCGGCAUCa -3'
miRNA:   3'- aCUGGCGGUGcGCGCuCGa-GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 126695 0.77 0.290422
Target:  5'- aGGCCGUCGCGCGCGuGCaCGGCAc- -3'
miRNA:   3'- aCUGGCGGUGCGCGCuCGaGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 132321 0.77 0.290422
Target:  5'- cGACCGCCGCGCGCccgagugacuGCUCAuCGUUg -3'
miRNA:   3'- aCUGGCGGUGCGCGcu--------CGAGUuGUAG- -5'
25039 3' -56.5 NC_005336.1 + 9998 0.77 0.297311
Target:  5'- --gUCGCCGCGCGCGAGCgcacCAGCAc- -3'
miRNA:   3'- acuGGCGGUGCGCGCUCGa---GUUGUag -5'
25039 3' -56.5 NC_005336.1 + 131532 0.77 0.304327
Target:  5'- cGAgCGUCAUGCGCGAGCUCAu---- -3'
miRNA:   3'- aCUgGCGGUGCGCGCUCGAGUuguag -5'
25039 3' -56.5 NC_005336.1 + 121103 0.77 0.304327
Target:  5'- -cACCGCCAC-CGCGAgauccccgacaGCUCGGCGUCg -3'
miRNA:   3'- acUGGCGGUGcGCGCU-----------CGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 41467 0.76 0.331384
Target:  5'- aGACCGCCGCcgucgaagaaccagGaCGCGAGCUCGcggacgGCGUCc -3'
miRNA:   3'- aCUGGCGGUG--------------C-GCGCUCGAGU------UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 134378 0.76 0.333653
Target:  5'- cUGACgCGCCACGUgcccGCGAGCcggcaCGGCAUCg -3'
miRNA:   3'- -ACUG-GCGGUGCG----CGCUCGa----GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 21498 0.76 0.341301
Target:  5'- gUGGCCGCgCGCGCGgcCGAGCUCGcggAgGUCa -3'
miRNA:   3'- -ACUGGCG-GUGCGC--GCUCGAGU---UgUAG- -5'
25039 3' -56.5 NC_005336.1 + 30440 0.76 0.34986
Target:  5'- cGGCCGCCGCGuCGCGGGCcuuuuugggguauaaCAACAUg -3'
miRNA:   3'- aCUGGCGGUGC-GCGCUCGa--------------GUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 97168 0.75 0.364998
Target:  5'- aGACCuccgcggcGCCGCGCGCGAGCaCGcCGUCc -3'
miRNA:   3'- aCUGG--------CGGUGCGCGCUCGaGUuGUAG- -5'
25039 3' -56.5 NC_005336.1 + 102344 0.75 0.373146
Target:  5'- cGACCuCgCGCGCGCGGGCgUCAGCAc- -3'
miRNA:   3'- aCUGGcG-GUGCGCGCUCG-AGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 133597 0.75 0.376439
Target:  5'- cGGCCGCCgacggaacugcucguGCGCGCGcuGCUCA-CAUCc -3'
miRNA:   3'- aCUGGCGG---------------UGCGCGCu-CGAGUuGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.