miRNA display CGI


Results 1 - 20 of 395 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25039 3' -56.5 NC_005336.1 + 6219 0.74 0.40695
Target:  5'- cGGCgGCCgGCGCGCGAGCacggCGGcCGUCg -3'
miRNA:   3'- aCUGgCGG-UGCGCGCUCGa---GUU-GUAG- -5'
25039 3' -56.5 NC_005336.1 + 69838 0.75 0.381417
Target:  5'- gUGuACCGCCACgGCGCGAcGCUC-GCGUg -3'
miRNA:   3'- -AC-UGGCGGUG-CGCGCU-CGAGuUGUAg -5'
25039 3' -56.5 NC_005336.1 + 5973 0.75 0.381417
Target:  5'- cGugCGCCGCGCGCaGAcGUccagCAGCGUCg -3'
miRNA:   3'- aCugGCGGUGCGCG-CU-CGa---GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 45510 0.75 0.381417
Target:  5'- cGAccCCGCCACGCccaGCGGGCUgGACAc- -3'
miRNA:   3'- aCU--GGCGGUGCG---CGCUCGAgUUGUag -5'
25039 3' -56.5 NC_005336.1 + 97364 0.75 0.381417
Target:  5'- -cGCUGCUGCGCucggGCGAGCUCGACcgCg -3'
miRNA:   3'- acUGGCGGUGCG----CGCUCGAGUUGuaG- -5'
25039 3' -56.5 NC_005336.1 + 92932 0.75 0.384759
Target:  5'- cGGCaaggCGCCGCGCGCGAGCgagcugaacaagcgCGugGUCa -3'
miRNA:   3'- aCUG----GCGGUGCGCGCUCGa-------------GUugUAG- -5'
25039 3' -56.5 NC_005336.1 + 115536 0.75 0.39832
Target:  5'- aGACgCGCgCACGgGCGAGCgCGugGUCg -3'
miRNA:   3'- aCUG-GCG-GUGCgCGCUCGaGUugUAG- -5'
25039 3' -56.5 NC_005336.1 + 125258 0.75 0.39832
Target:  5'- gUGAUCguGCCGgGCGCgGAGCUCGAgAUCg -3'
miRNA:   3'- -ACUGG--CGGUgCGCG-CUCGAGUUgUAG- -5'
25039 3' -56.5 NC_005336.1 + 104065 0.74 0.40695
Target:  5'- aGuuCGCggaGCGCgGCGGGCUCGACAUCc -3'
miRNA:   3'- aCugGCGg--UGCG-CGCUCGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 30440 0.76 0.34986
Target:  5'- cGGCCGCCGCGuCGCGGGCcuuuuugggguauaaCAACAUg -3'
miRNA:   3'- aCUGGCGGUGC-GCGCUCGa--------------GUUGUAg -5'
25039 3' -56.5 NC_005336.1 + 21498 0.76 0.341301
Target:  5'- gUGGCCGCgCGCGCGgcCGAGCUCGcggAgGUCa -3'
miRNA:   3'- -ACUGGCG-GUGCGC--GCUCGAGU---UgUAG- -5'
25039 3' -56.5 NC_005336.1 + 134378 0.76 0.333653
Target:  5'- cUGACgCGCCACGUgcccGCGAGCcggcaCGGCAUCg -3'
miRNA:   3'- -ACUG-GCGGUGCG----CGCUCGa----GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 6299 0.8 0.191845
Target:  5'- aGGCCGCCACGUGCccGAGCUCcGCGc- -3'
miRNA:   3'- aCUGGCGGUGCGCG--CUCGAGuUGUag -5'
25039 3' -56.5 NC_005336.1 + 11682 0.79 0.222776
Target:  5'- cGcCCGCCGCGCGC-AGCUCGuccGCGUCc -3'
miRNA:   3'- aCuGGCGGUGCGCGcUCGAGU---UGUAG- -5'
25039 3' -56.5 NC_005336.1 + 104911 0.77 0.283659
Target:  5'- gGGCCGCCGC-CGCG-GCggCGGCAUCa -3'
miRNA:   3'- aCUGGCGGUGcGCGCuCGa-GUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 126695 0.77 0.290422
Target:  5'- aGGCCGUCGCGCGCGuGCaCGGCAc- -3'
miRNA:   3'- aCUGGCGGUGCGCGCuCGaGUUGUag -5'
25039 3' -56.5 NC_005336.1 + 132321 0.77 0.290422
Target:  5'- cGACCGCCGCGCGCccgagugacuGCUCAuCGUUg -3'
miRNA:   3'- aCUGGCGGUGCGCGcu--------CGAGUuGUAG- -5'
25039 3' -56.5 NC_005336.1 + 121103 0.77 0.304327
Target:  5'- -cACCGCCAC-CGCGAgauccccgacaGCUCGGCGUCg -3'
miRNA:   3'- acUGGCGGUGcGCGCU-----------CGAGUUGUAG- -5'
25039 3' -56.5 NC_005336.1 + 131532 0.77 0.304327
Target:  5'- cGAgCGUCAUGCGCGAGCUCAu---- -3'
miRNA:   3'- aCUgGCGGUGCGCGCUCGAGUuguag -5'
25039 3' -56.5 NC_005336.1 + 41467 0.76 0.331384
Target:  5'- aGACCGCCGCcgucgaagaaccagGaCGCGAGCUCGcggacgGCGUCc -3'
miRNA:   3'- aCUGGCGGUG--------------C-GCGCUCGAGU------UGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.