miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25040 3' -57.2 NC_005336.1 + 99727 0.66 0.834919
Target:  5'- cGAGGCgGcCGC--CGGCGCGGcggauUGCUCGc -3'
miRNA:   3'- -CUCUGaC-GCGaaGUCGCGCC-----ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 21479 0.66 0.829865
Target:  5'- -cGACgcGCGCUUCAuggagguggccgcgcGCGCGGccgaGCUCGc -3'
miRNA:   3'- cuCUGa-CGCGAAGU---------------CGCGCCa---CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 100418 0.66 0.826458
Target:  5'- cGGGCgGCGCcgCAcGCGCG-UGCUCGc -3'
miRNA:   3'- cUCUGaCGCGaaGU-CGCGCcACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 64566 0.66 0.826458
Target:  5'- uGAGgcGCUGCGCguggCGGCGCGcGUcguagacggGCUCc -3'
miRNA:   3'- -CUC--UGACGCGaa--GUCGCGC-CA---------CGAGu -5'
25040 3' -57.2 NC_005336.1 + 27546 0.66 0.826458
Target:  5'- -cGACgGCGUUgUCGGCGCGGcGCg-- -3'
miRNA:   3'- cuCUGaCGCGA-AGUCGCGCCaCGagu -5'
25040 3' -57.2 NC_005336.1 + 129741 0.66 0.817816
Target:  5'- --uGCUGCGCUUCGGCGCagacGUGaaCGc -3'
miRNA:   3'- cucUGACGCGAAGUCGCGc---CACgaGU- -5'
25040 3' -57.2 NC_005336.1 + 33306 0.66 0.817816
Target:  5'- cGGAgaGCGCggagacUAGCGCGGUGUgcuUCGc -3'
miRNA:   3'- cUCUgaCGCGaa----GUCGCGCCACG---AGU- -5'
25040 3' -57.2 NC_005336.1 + 95524 0.66 0.809002
Target:  5'- -cGACgcaaGCGCacuccggcgCGGCGCGGUGCg-- -3'
miRNA:   3'- cuCUGa---CGCGaa-------GUCGCGCCACGagu -5'
25040 3' -57.2 NC_005336.1 + 10392 0.66 0.800024
Target:  5'- cGGGCUGU-CUUCgaaggcGGCGCGGaGCUCGg -3'
miRNA:   3'- cUCUGACGcGAAG------UCGCGCCaCGAGU- -5'
25040 3' -57.2 NC_005336.1 + 130307 0.66 0.800024
Target:  5'- cGAGGCUGCGCUcuUCcucgaggagacgGGCGCgagcccGGUGCcCGc -3'
miRNA:   3'- -CUCUGACGCGA--AG------------UCGCG------CCACGaGU- -5'
25040 3' -57.2 NC_005336.1 + 80115 0.66 0.799117
Target:  5'- aGGGCUGCGCagCGGCcuGCucaccgaGGUGUUCAc -3'
miRNA:   3'- cUCUGACGCGaaGUCG--CG-------CCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 92960 0.66 0.794562
Target:  5'- aGGACuUGCGCUgguugaugcccaggCAGaugGCGGUGUUCGu -3'
miRNA:   3'- cUCUG-ACGCGAa-------------GUCg--CGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 38346 0.66 0.79089
Target:  5'- aGGGCUggaagGCGCg-CAGCGUGGgcgUGCUCGg -3'
miRNA:   3'- cUCUGA-----CGCGaaGUCGCGCC---ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 90940 0.66 0.79089
Target:  5'- uGGGCUGCGUcgacCGGCGCGGgaaCUCc -3'
miRNA:   3'- cUCUGACGCGaa--GUCGCGCCac-GAGu -5'
25040 3' -57.2 NC_005336.1 + 52652 0.66 0.79089
Target:  5'- cGAG-CUGCGCggCgAGCuGCGGcGCUCc -3'
miRNA:   3'- -CUCuGACGCGaaG-UCG-CGCCaCGAGu -5'
25040 3' -57.2 NC_005336.1 + 94060 0.66 0.787195
Target:  5'- -cGuCUGUGCgacuucauggugCGGCGCGGUGcCUCGc -3'
miRNA:   3'- cuCuGACGCGaa----------GUCGCGCCAC-GAGU- -5'
25040 3' -57.2 NC_005336.1 + 124039 0.67 0.78161
Target:  5'- -cGACUGuCGCgucgcgCGGcCGCGGcGCUCGc -3'
miRNA:   3'- cuCUGAC-GCGaa----GUC-GCGCCaCGAGU- -5'
25040 3' -57.2 NC_005336.1 + 129538 0.67 0.78161
Target:  5'- aGGACUGCggccgcgccgaGC-UCGccucCGCGGUGCUCAa -3'
miRNA:   3'- cUCUGACG-----------CGaAGUc---GCGCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 134306 0.67 0.78161
Target:  5'- -cGACUGCGCgu-GGCGCuGGUGaaCAg -3'
miRNA:   3'- cuCUGACGCGaagUCGCG-CCACgaGU- -5'
25040 3' -57.2 NC_005336.1 + 26485 0.67 0.78161
Target:  5'- -cGGCcGCGUUcccgUCGGCGuCGGUGCUg- -3'
miRNA:   3'- cuCUGaCGCGA----AGUCGC-GCCACGAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.