miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 3' -53.2 NC_005336.1 + 9292 0.66 0.973786
Target:  5'- uUCGUCcgcgGGGUCGAAgagcacggggaucuuGACCUCcGCGCUg -3'
miRNA:   3'- -GGUAGa---CCUAGUUU---------------CUGGGGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 78235 0.66 0.972689
Target:  5'- gCCAggCUGGG-C-AGGugCCCGaCGCCg -3'
miRNA:   3'- -GGUa-GACCUaGuUUCugGGGUcGCGG- -5'
25041 3' -53.2 NC_005336.1 + 81983 0.66 0.972689
Target:  5'- cCCGUgCUGGc-CAu--GCCCCcGCGCCg -3'
miRNA:   3'- -GGUA-GACCuaGUuucUGGGGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 17314 0.66 0.9698
Target:  5'- gCGUC-GGcGUCGugaGAGAgCCCAGCGUg -3'
miRNA:   3'- gGUAGaCC-UAGU---UUCUgGGGUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 64172 0.66 0.9698
Target:  5'- gCGUC-GGcUCuGGGACCCaggcGCGCCa -3'
miRNA:   3'- gGUAGaCCuAGuUUCUGGGgu--CGCGG- -5'
25041 3' -53.2 NC_005336.1 + 71285 0.66 0.9698
Target:  5'- -aGUCUGGA-CAccAAGAUCC-AGCGCa -3'
miRNA:   3'- ggUAGACCUaGU--UUCUGGGgUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 18758 0.66 0.969499
Target:  5'- gCGUCUGGugugcacgcacauGUCGGugacGGGCaCCCGGUgGCCg -3'
miRNA:   3'- gGUAGACC-------------UAGUU----UCUG-GGGUCG-CGG- -5'
25041 3' -53.2 NC_005336.1 + 45495 0.66 0.966699
Target:  5'- gCCGUCgaaGGG-CGAcGACCCCGccaCGCCc -3'
miRNA:   3'- -GGUAGa--CCUaGUUuCUGGGGUc--GCGG- -5'
25041 3' -53.2 NC_005336.1 + 51345 0.66 0.966699
Target:  5'- aCGUCgccGaGGUCGAugucGGCCUCGGCgGCCa -3'
miRNA:   3'- gGUAGa--C-CUAGUUu---CUGGGGUCG-CGG- -5'
25041 3' -53.2 NC_005336.1 + 43072 0.66 0.966699
Target:  5'- gCCuuUCUccc-CAAAGACCCCGGCacuGCCg -3'
miRNA:   3'- -GGu-AGAccuaGUUUCUGGGGUCG---CGG- -5'
25041 3' -53.2 NC_005336.1 + 83999 0.66 0.96338
Target:  5'- cCUAUCaUGaAUCgGAAGACgUCGGCGCCc -3'
miRNA:   3'- -GGUAG-ACcUAG-UUUCUGgGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 118709 0.66 0.96338
Target:  5'- --cUCcGGccgCAaggcaccgaacAAGACCCCGGUGCCg -3'
miRNA:   3'- gguAGaCCua-GU-----------UUCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 98700 0.66 0.959837
Target:  5'- uCCGUCaucacGcGcgCAGAGAUCCCGGUgGCCc -3'
miRNA:   3'- -GGUAGa----C-CuaGUUUCUGGGGUCG-CGG- -5'
25041 3' -53.2 NC_005336.1 + 6159 0.67 0.956065
Target:  5'- gCGUUUGaa-CAcguGGCCCCAGCGCUc -3'
miRNA:   3'- gGUAGACcuaGUuu-CUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 55546 0.67 0.956065
Target:  5'- uCCAaCcGGA-CAGucGCCCCuAGCGCCa -3'
miRNA:   3'- -GGUaGaCCUaGUUucUGGGG-UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 54162 0.67 0.956065
Target:  5'- cUCGUCgGGcgCGuccGGCCCgGGCGCg -3'
miRNA:   3'- -GGUAGaCCuaGUuu-CUGGGgUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 44203 0.67 0.956065
Target:  5'- -uGUCUGcccGcgCGgcGAGACCCC-GCGCCc -3'
miRNA:   3'- ggUAGAC---CuaGU--UUCUGGGGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 43934 0.67 0.952059
Target:  5'- aCCAUgUGuGuguUCGAgauaGGcGCCUCGGCGCCg -3'
miRNA:   3'- -GGUAgAC-Cu--AGUU----UC-UGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 38447 0.67 0.952059
Target:  5'- gCCGcCUGGAUCGGccgccGCCCCguGGUGCUc -3'
miRNA:   3'- -GGUaGACCUAGUUuc---UGGGG--UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 56788 0.67 0.952059
Target:  5'- gCGcCUGGc-CAccAAGAUCCUGGCGCCg -3'
miRNA:   3'- gGUaGACCuaGU--UUCUGGGGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.