miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 5' -56.9 NC_005336.1 + 75287 0.66 0.87105
Target:  5'- gCGGCGCCGGaGUcCUggCGCGCGACc -3'
miRNA:   3'- gGCUGUGGCUcCAcGAgaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 3441 0.66 0.870323
Target:  5'- gCCGACggucaggcaggucACCGAGGcggaGCcgUUCGCGCgGACg -3'
miRNA:   3'- -GGCUG-------------UGGCUCCa---CGa-GAGCGUG-CUG- -5'
25041 5' -56.9 NC_005336.1 + 95853 0.66 0.856116
Target:  5'- gCGGCGCCGAGGcGCcuaUCUCGaaCAC-ACa -3'
miRNA:   3'- gGCUGUGGCUCCaCG---AGAGC--GUGcUG- -5'
25041 5' -56.9 NC_005336.1 + 52170 0.66 0.887865
Target:  5'- cCCG-CGCUGGGGgcaauaucggccacGCUCUCGC-CGGg -3'
miRNA:   3'- -GGCuGUGGCUCCa-------------CGAGAGCGuGCUg -5'
25041 5' -56.9 NC_005336.1 + 77690 0.66 0.863685
Target:  5'- gCGGCgGCCuuGGUGCgCUCGCGC-ACg -3'
miRNA:   3'- gGCUG-UGGcuCCACGaGAGCGUGcUG- -5'
25041 5' -56.9 NC_005336.1 + 61793 0.66 0.878207
Target:  5'- gCGACcgcgaGCCGGaucuGGUGCUCgcaGgGCGGCg -3'
miRNA:   3'- gGCUG-----UGGCU----CCACGAGag-CgUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 51835 0.66 0.891872
Target:  5'- uCCGACGaCGAGGcGCUCggCGC-CGuGCa -3'
miRNA:   3'- -GGCUGUgGCUCCaCGAGa-GCGuGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 44371 0.66 0.856116
Target:  5'- uCgGGCACCaAGGgccuaaugUGCcgCUUGCGCGGCa -3'
miRNA:   3'- -GgCUGUGGcUCC--------ACGa-GAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 13408 0.66 0.878207
Target:  5'- gCCGGCGgCGGGGaugguuaGCUC-CGCGCGcCc -3'
miRNA:   3'- -GGCUGUgGCUCCa------CGAGaGCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 64437 0.66 0.878207
Target:  5'- aUGGcCACCGcGGUGCUCgagcUCGUcagggACGGCg -3'
miRNA:   3'- gGCU-GUGGCuCCACGAG----AGCG-----UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 69159 0.66 0.856116
Target:  5'- gUGACGCUGGuGGUGggCUuccaccccgcggCGCGCGACg -3'
miRNA:   3'- gGCUGUGGCU-CCACgaGA------------GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 30236 0.66 0.856116
Target:  5'- -aGAUGCCGcGGGUGCUCUUG-AgGGCc -3'
miRNA:   3'- ggCUGUGGC-UCCACGAGAGCgUgCUG- -5'
25041 5' -56.9 NC_005336.1 + 103225 0.66 0.891872
Target:  5'- aUCGGCGCCGGcGUGCgcaaGCccGCGACg -3'
miRNA:   3'- -GGCUGUGGCUcCACGagagCG--UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 64811 0.66 0.885149
Target:  5'- gCGuCACCGAGGccgaccugGCgCUCGCA-GACc -3'
miRNA:   3'- gGCuGUGGCUCCa-------CGaGAGCGUgCUG- -5'
25041 5' -56.9 NC_005336.1 + 56122 0.66 0.891872
Target:  5'- gCCGACAUCGcGGacaGCg--UGCGCGACc -3'
miRNA:   3'- -GGCUGUGGCuCCa--CGagaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 102468 0.66 0.891872
Target:  5'- uUCGGCACCGAGGUcGCguaC-CugGGCc -3'
miRNA:   3'- -GGCUGUGGCUCCA-CGagaGcGugCUG- -5'
25041 5' -56.9 NC_005336.1 + 100105 0.66 0.891872
Target:  5'- gCGGCGgCGAGGcGCcCgccgCGCACGuACa -3'
miRNA:   3'- gGCUGUgGCUCCaCGaGa---GCGUGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 22325 0.66 0.885149
Target:  5'- gCCGcCGCCGAGcGcggGCUUUCGCuGCG-Cg -3'
miRNA:   3'- -GGCuGUGGCUC-Ca--CGAGAGCG-UGCuG- -5'
25041 5' -56.9 NC_005336.1 + 129494 0.66 0.891872
Target:  5'- aCGAcCugCGca-UGgUCUCGCACGACg -3'
miRNA:   3'- gGCU-GugGCuccACgAGAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 118207 0.66 0.863685
Target:  5'- aCGGCgcGCUGAGGgcGCUCacCGCGCuGACg -3'
miRNA:   3'- gGCUG--UGGCUCCa-CGAGa-GCGUG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.