miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 5' -56.9 NC_005336.1 + 129634 1.12 0.001609
Target:  5'- cCCGACACCGAGGUGCUCUCGCACGACg -3'
miRNA:   3'- -GGCUGUGGCUCCACGAGAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 34228 0.82 0.162482
Target:  5'- cCCGGCGCCGAGGUGacgCggcacgCGCugGACg -3'
miRNA:   3'- -GGCUGUGGCUCCACga-Ga-----GCGugCUG- -5'
25041 5' -56.9 NC_005336.1 + 42602 0.79 0.231593
Target:  5'- gUCGugACCGAGGccuguguggacggcgUGCUCgCGCGCGGCg -3'
miRNA:   3'- -GGCugUGGCUCC---------------ACGAGaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 61694 0.78 0.258404
Target:  5'- gCGACGUCGAgaaGGUGCUCgaggCGCACGGCa -3'
miRNA:   3'- gGCUGUGGCU---CCACGAGa---GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 41909 0.78 0.283733
Target:  5'- aCCGucucGCGCCGAGGcGCUCgcggaGCGCGGCg -3'
miRNA:   3'- -GGC----UGUGGCUCCaCGAGag---CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 51374 0.77 0.325342
Target:  5'- gCCGGCGCCGAGGccgcgccguagGCUUUCauGCGCGAUa -3'
miRNA:   3'- -GGCUGUGGCUCCa----------CGAGAG--CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 136408 0.76 0.363355
Target:  5'- gCgGACGCgGAGGgacgccUGCUCUCGC-CGGCg -3'
miRNA:   3'- -GgCUGUGgCUCC------ACGAGAGCGuGCUG- -5'
25041 5' -56.9 NC_005336.1 + 136408 0.76 0.363355
Target:  5'- gCgGACGCgGAGGgacgccUGCUCUCGC-CGGCg -3'
miRNA:   3'- -GgCUGUGgCUCC------ACGAGAGCGuGCUG- -5'
25041 5' -56.9 NC_005336.1 + 121326 0.75 0.387598
Target:  5'- gCGcCACgGAGGUGCUCgCGCcgGCGGCg -3'
miRNA:   3'- gGCuGUGgCUCCACGAGaGCG--UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 56839 0.75 0.387598
Target:  5'- aCCGGCGCCcucggaggcgGAGGcGCUCUCcGCGCGGg -3'
miRNA:   3'- -GGCUGUGG----------CUCCaCGAGAG-CGUGCUg -5'
25041 5' -56.9 NC_005336.1 + 16052 0.75 0.42153
Target:  5'- gCCGGCGgCGAGcaGCUCgCGCACGAUg -3'
miRNA:   3'- -GGCUGUgGCUCcaCGAGaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 109403 0.74 0.439154
Target:  5'- uCUG-CGCCGAGaaGCUCUCGCGCGcGCa -3'
miRNA:   3'- -GGCuGUGGCUCcaCGAGAGCGUGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 105255 0.74 0.448122
Target:  5'- cCUGGCGCCGGuGGUGUUCUacCGCucggGCGGCg -3'
miRNA:   3'- -GGCUGUGGCU-CCACGAGA--GCG----UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 94495 0.74 0.457191
Target:  5'- gCCGACGCCGAGGcGCagugC-CGCGCGcuGCa -3'
miRNA:   3'- -GGCUGUGGCUCCaCGa---GaGCGUGC--UG- -5'
25041 5' -56.9 NC_005336.1 + 87935 0.74 0.466358
Target:  5'- uCCGGCGCgGAGGUGUcCgccgCGCGCGcCa -3'
miRNA:   3'- -GGCUGUGgCUCCACGaGa---GCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 11859 0.73 0.494408
Target:  5'- uCCGGCGCCaAGGgcagcGCUgUgCGCACGGCg -3'
miRNA:   3'- -GGCUGUGGcUCCa----CGAgA-GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 42474 0.73 0.494408
Target:  5'- aCCGcuACGCgGAGGUGCcCUCGC-CGAg -3'
miRNA:   3'- -GGC--UGUGgCUCCACGaGAGCGuGCUg -5'
25041 5' -56.9 NC_005336.1 + 12664 0.73 0.503929
Target:  5'- gCGcuGCGCCGGGG-GgUgUCGCGCGACa -3'
miRNA:   3'- gGC--UGUGGCUCCaCgAgAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 64311 0.73 0.507759
Target:  5'- aCCGACGgCGAGaagaucaaggucugcGUGUUCUCGCugaGCGGCu -3'
miRNA:   3'- -GGCUGUgGCUC---------------CACGAGAGCG---UGCUG- -5'
25041 5' -56.9 NC_005336.1 + 124421 0.73 0.523202
Target:  5'- -gGACACCuGGGaucucGCgcgCUCGCACGACg -3'
miRNA:   3'- ggCUGUGGcUCCa----CGa--GAGCGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.