miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 5' -56.9 NC_005336.1 + 130504 0.7 0.673302
Target:  5'- cCCGcCGCgGAGccUGCUCUCGCGCcGCg -3'
miRNA:   3'- -GGCuGUGgCUCc-ACGAGAGCGUGcUG- -5'
25041 5' -56.9 NC_005336.1 + 44062 0.72 0.58251
Target:  5'- uCCGGCGaCGAGG-GCaUCUacCGCGCGGCg -3'
miRNA:   3'- -GGCUGUgGCUCCaCG-AGA--GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 14991 0.71 0.632934
Target:  5'- gCCGAgCGCCGGGccucGggCUCGCGCGGCg -3'
miRNA:   3'- -GGCU-GUGGCUCca--CgaGAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 42135 0.71 0.632934
Target:  5'- gCGACcCCGAGGcGCcgCggCGCGCGGCc -3'
miRNA:   3'- gGCUGuGGCUCCaCGa-Ga-GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 122738 0.71 0.643047
Target:  5'- cCCGGCGucCUGAGGcUGCgCUCGC-CGGCc -3'
miRNA:   3'- -GGCUGU--GGCUCC-ACGaGAGCGuGCUG- -5'
25041 5' -56.9 NC_005336.1 + 38463 0.7 0.663238
Target:  5'- gCCGcC-CCGuGGUGCUCaCGgGCGGCa -3'
miRNA:   3'- -GGCuGuGGCuCCACGAGaGCgUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 44250 0.7 0.673302
Target:  5'- gCUGGCGCUgGAGGcGCgcgCGCGCGGCg -3'
miRNA:   3'- -GGCUGUGG-CUCCaCGagaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 32385 0.7 0.673302
Target:  5'- -aGAacuGCCGcAGGUGCUCgucCGUGCGGCa -3'
miRNA:   3'- ggCUg--UGGC-UCCACGAGa--GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 38844 0.7 0.673302
Target:  5'- gCGACAUCGuGGUcGCggUCGCGCGGa -3'
miRNA:   3'- gGCUGUGGCuCCA-CGagAGCGUGCUg -5'
25041 5' -56.9 NC_005336.1 + 101967 0.72 0.562536
Target:  5'- aCGGCACCGAGuccaucGUGCUCgagaUCG-ACGACg -3'
miRNA:   3'- gGCUGUGGCUC------CACGAG----AGCgUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 65994 0.72 0.552617
Target:  5'- gCCGGCGCCGuGGagGCgCU-GCGCGGCg -3'
miRNA:   3'- -GGCUGUGGCuCCa-CGaGAgCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 73767 0.72 0.552617
Target:  5'- aCCGACAUCGAGGUcuGC-CUCGgaaACGAg -3'
miRNA:   3'- -GGCUGUGGCUCCA--CGaGAGCg--UGCUg -5'
25041 5' -56.9 NC_005336.1 + 51374 0.77 0.325342
Target:  5'- gCCGGCGCCGAGGccgcgccguagGCUUUCauGCGCGAUa -3'
miRNA:   3'- -GGCUGUGGCUCCa----------CGAGAG--CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 136408 0.76 0.363355
Target:  5'- gCgGACGCgGAGGgacgccUGCUCUCGC-CGGCg -3'
miRNA:   3'- -GgCUGUGgCUCC------ACGAGAGCGuGCUG- -5'
25041 5' -56.9 NC_005336.1 + 56839 0.75 0.387598
Target:  5'- aCCGGCGCCcucggaggcgGAGGcGCUCUCcGCGCGGg -3'
miRNA:   3'- -GGCUGUGG----------CUCCaCGAGAG-CGUGCUg -5'
25041 5' -56.9 NC_005336.1 + 87935 0.74 0.466358
Target:  5'- uCCGGCGCgGAGGUGUcCgccgCGCGCGcCa -3'
miRNA:   3'- -GGCUGUGgCUCCACGaGa---GCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 42474 0.73 0.494408
Target:  5'- aCCGcuACGCgGAGGUGCcCUCGC-CGAg -3'
miRNA:   3'- -GGC--UGUGgCUCCACGaGAGCGuGCUg -5'
25041 5' -56.9 NC_005336.1 + 12664 0.73 0.503929
Target:  5'- gCGcuGCGCCGGGG-GgUgUCGCGCGACa -3'
miRNA:   3'- gGC--UGUGGCUCCaCgAgAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 50909 0.72 0.532945
Target:  5'- uCCGACAaCGAGGUGCUCaCGCucauCGuGCa -3'
miRNA:   3'- -GGCUGUgGCUCCACGAGaGCGu---GC-UG- -5'
25041 5' -56.9 NC_005336.1 + 55702 0.72 0.552617
Target:  5'- uCCGGCACC-AGaacCUCUCGCugGACg -3'
miRNA:   3'- -GGCUGUGGcUCcacGAGAGCGugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.