miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 5' -56.9 NC_005336.1 + 3441 0.66 0.870323
Target:  5'- gCCGACggucaggcaggucACCGAGGcggaGCcgUUCGCGCgGACg -3'
miRNA:   3'- -GGCUG-------------UGGCUCCa---CGa-GAGCGUG-CUG- -5'
25041 5' -56.9 NC_005336.1 + 3441 0.66 0.870323
Target:  5'- gCCGACggucaggcaggucACCGAGGcggaGCcgUUCGCGCgGACg -3'
miRNA:   3'- -GGCUG-------------UGGCUCCa---CGa-GAGCGUG-CUG- -5'
25041 5' -56.9 NC_005336.1 + 5805 0.66 0.877501
Target:  5'- aCGGCgcaggcgGCCGAGGccgGCgccgCgCGCGCGGCc -3'
miRNA:   3'- gGCUG-------UGGCUCCa--CGa---GaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 5886 0.69 0.751901
Target:  5'- cCCGGCGCCGcGGgcguggGCUCaggauaGUGCGGCg -3'
miRNA:   3'- -GGCUGUGGCuCCa-----CGAGag----CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 7186 0.67 0.848348
Target:  5'- -aGAgACCGAGucggagcucGUGauagagCUCGCGCGACa -3'
miRNA:   3'- ggCUgUGGCUC---------CACga----GAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 9346 0.72 0.542752
Target:  5'- gCGAgACCgGAGGUGUgccgcagCGCACGGCg -3'
miRNA:   3'- gGCUgUGG-CUCCACGaga----GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 9370 0.7 0.683332
Target:  5'- cCCG-CGCgUGAGcGUGCUCaccaCGCGCGGCu -3'
miRNA:   3'- -GGCuGUG-GCUC-CACGAGa---GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 11859 0.73 0.494408
Target:  5'- uCCGGCGCCaAGGgcagcGCUgUgCGCACGGCg -3'
miRNA:   3'- -GGCUGUGGcUCCa----CGAgA-GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 12664 0.73 0.503929
Target:  5'- gCGcuGCGCCGGGG-GgUgUCGCGCGACa -3'
miRNA:   3'- gGC--UGUGGCUCCaCgAgAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 13095 0.69 0.751901
Target:  5'- gCGGCGCCGc-GUGC-CgugcacgCGCGCGACg -3'
miRNA:   3'- gGCUGUGGCucCACGaGa------GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 13133 0.68 0.770699
Target:  5'- gCCaGGCGCCGAGGUcCUCgucggcugUGgGCGGCa -3'
miRNA:   3'- -GG-CUGUGGCUCCAcGAGa-------GCgUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 13289 0.67 0.84039
Target:  5'- gCGuCGCCGccuAGGUGC---CGCGCGGCg -3'
miRNA:   3'- gGCuGUGGC---UCCACGagaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 13408 0.66 0.878207
Target:  5'- gCCGGCGgCGGGGaugguuaGCUC-CGCGCGcCc -3'
miRNA:   3'- -GGCUGUgGCUCCa------CGAGaGCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 14511 0.66 0.853806
Target:  5'- uCCGGCcggaaccCCGAGGUGCacucgaUCUCgagcuccgcgcccgGCACGAUc -3'
miRNA:   3'- -GGCUGu------GGCUCCACG------AGAG--------------CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 14991 0.71 0.632934
Target:  5'- gCCGAgCGCCGGGccucGggCUCGCGCGGCg -3'
miRNA:   3'- -GGCU-GUGGCUCca--CgaGAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 15970 0.67 0.848348
Target:  5'- cCCGAgGCCaagugcGAGG-GCUCgCGCGCGuCc -3'
miRNA:   3'- -GGCUgUGG------CUCCaCGAGaGCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 16052 0.75 0.42153
Target:  5'- gCCGGCGgCGAGcaGCUCgCGCACGAUg -3'
miRNA:   3'- -GGCUGUgGCUCcaCGAGaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 18685 0.68 0.779922
Target:  5'- gCGACGCCGAGcUGUcggggaUCUCGCGguggcggugcCGGCg -3'
miRNA:   3'- gGCUGUGGCUCcACG------AGAGCGU----------GCUG- -5'
25041 5' -56.9 NC_005336.1 + 20047 0.68 0.770699
Target:  5'- cUCGaaGCACCaGAGGUcgGC-CUCGCAgGGCg -3'
miRNA:   3'- -GGC--UGUGG-CUCCA--CGaGAGCGUgCUG- -5'
25041 5' -56.9 NC_005336.1 + 21078 0.69 0.742343
Target:  5'- gCGGCACCGGGGUcuuGUUCggUGCcuuGCGGCc -3'
miRNA:   3'- gGCUGUGGCUCCA---CGAGa-GCG---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.