Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25043 | 5' | -65.2 | NC_005336.1 | + | 129194 | 1.08 | 0.000552 |
Target: 5'- cGCGCGCCGCCGCGGUCGUCCUCCCCUc -3' miRNA: 3'- -CGCGCGGCGGCGCCAGCAGGAGGGGA- -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 108399 | 0.77 | 0.104327 |
Target: 5'- aGCGCGCCaCCgaggGCGG-CGUCUUCCCCa -3' miRNA: 3'- -CGCGCGGcGG----CGCCaGCAGGAGGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 42636 | 0.76 | 0.126944 |
Target: 5'- cGCGCGgCGCCGCGGagGUCUUCgaCCg -3' miRNA: 3'- -CGCGCgGCGGCGCCagCAGGAGg-GGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 9677 | 0.75 | 0.136541 |
Target: 5'- uGCGCgGCCGCgGCGG-CGgCCUCCUCg -3' miRNA: 3'- -CGCG-CGGCGgCGCCaGCaGGAGGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 124299 | 0.74 | 0.154027 |
Target: 5'- gGCGCaGCCGCCGcCGGUacUGcUCUCCCCg -3' miRNA: 3'- -CGCG-CGGCGGC-GCCA--GCaGGAGGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 29261 | 0.74 | 0.169451 |
Target: 5'- uGCGCGCCacgcuGCUGCGGgaggCGUCC-CCUCg -3' miRNA: 3'- -CGCGCGG-----CGGCGCCa---GCAGGaGGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 103634 | 0.74 | 0.160421 |
Target: 5'- cGCGCGaggaCGCCGUGGUCGaggugcaggaguucUCCUCCgCg -3' miRNA: 3'- -CGCGCg---GCGGCGCCAGC--------------AGGAGGgGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 68462 | 0.74 | 0.154027 |
Target: 5'- gGCGCGCCGCCGCGGacgCGg-CUCUgCg -3' miRNA: 3'- -CGCGCGGCGGCGCCa--GCagGAGGgGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 85876 | 0.74 | 0.173518 |
Target: 5'- uGCGCGUCGCggaCGCGGUCGUgCgCCUCa -3' miRNA: 3'- -CGCGCGGCG---GCGCCAGCAgGaGGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 67833 | 0.74 | 0.161573 |
Target: 5'- gGCGCGCCGCgGUGGUCG-CgCUCCa-- -3' miRNA: 3'- -CGCGCGGCGgCGCCAGCaG-GAGGgga -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 455 | 0.73 | 0.204487 |
Target: 5'- cGCGUGCCGCgGgCGGccgcgCGUCCgcgacggCCCCg -3' miRNA: 3'- -CGCGCGGCGgC-GCCa----GCAGGa------GGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 13286 | 0.73 | 0.199321 |
Target: 5'- cGCGCGUCGCCgccuaggugccgcGCGG-CGUCCUCgaCCg -3' miRNA: 3'- -CGCGCGGCGG-------------CGCCaGCAGGAGg-GGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 93789 | 0.73 | 0.190666 |
Target: 5'- gGCGCGCCGCUGCGG-CGacUCCUgUgCUg -3' miRNA: 3'- -CGCGCGGCGGCGCCaGC--AGGAgGgGA- -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 76159 | 0.73 | 0.190666 |
Target: 5'- aGCGCGCCGCCguugaagaGCGG-CGUCUgCCCg- -3' miRNA: 3'- -CGCGCGGCGG--------CGCCaGCAGGaGGGga -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 55651 | 0.73 | 0.204487 |
Target: 5'- cGCGUGCUccgcgacaGCgGUGGUCuGUCCUCCCgCUg -3' miRNA: 3'- -CGCGCGG--------CGgCGCCAG-CAGGAGGG-GA- -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 455 | 0.73 | 0.204487 |
Target: 5'- cGCGUGCCGCgGgCGGccgcgCGUCCgcgacggCCCCg -3' miRNA: 3'- -CGCGCGGCGgC-GCCa----GCAGGa------GGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 29231 | 0.73 | 0.195179 |
Target: 5'- aGUGCGCCGCCGCGcugcUCG-CCUUCgCCg -3' miRNA: 3'- -CGCGCGGCGGCGCc---AGCaGGAGG-GGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 35902 | 0.72 | 0.234739 |
Target: 5'- gGCGcCGCCGCCGCGGUgccgcgugaCGUgcuUCUgCCCa -3' miRNA: 3'- -CGC-GCGGCGGCGCCA---------GCA---GGAgGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 16683 | 0.72 | 0.229448 |
Target: 5'- cGUGCGuCCGuCCGcCGG-CG-CCUCCCCg -3' miRNA: 3'- -CGCGC-GGC-GGC-GCCaGCaGGAGGGGa -5' |
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25043 | 5' | -65.2 | NC_005336.1 | + | 59569 | 0.72 | 0.219168 |
Target: 5'- gGCGCGCCGCCGagccgCGUCUUCaCCUg -3' miRNA: 3'- -CGCGCGGCGGCgcca-GCAGGAG-GGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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