miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 5' -65.2 NC_005336.1 + 87855 0.66 0.522967
Target:  5'- cGCGCGuCCGuCCGCGauggaGUCGUaguggugCCCCg -3'
miRNA:   3'- -CGCGC-GGC-GGCGC-----CAGCAgga----GGGGa -5'
25043 5' -65.2 NC_005336.1 + 108835 0.67 0.460227
Target:  5'- gGCGCGCCGUCGCaGaUCGaCaUCCUCg -3'
miRNA:   3'- -CGCGCGGCGGCGcC-AGCaGgAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 86241 0.67 0.451586
Target:  5'- cCGCGaCCaCCGCGGcC-UCCUCCUCg -3'
miRNA:   3'- cGCGC-GGcGGCGCCaGcAGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 129194 1.08 0.000552
Target:  5'- cGCGCGCCGCCGCGGUCGUCCUCCCCUc -3'
miRNA:   3'- -CGCGCGGCGGCGCCAGCAGGAGGGGA- -5'
25043 5' -65.2 NC_005336.1 + 121829 0.66 0.513786
Target:  5'- uCGCGCUGggcugcgagaCCGCGGUCGggcCCUgCUCg -3'
miRNA:   3'- cGCGCGGC----------GGCGCCAGCa--GGAgGGGa -5'
25043 5' -65.2 NC_005336.1 + 73793 0.66 0.513786
Target:  5'- cGCGCGCacaCGCCGCGcagCG-CCUCCa-- -3'
miRNA:   3'- -CGCGCG---GCGGCGCca-GCaGGAGGgga -5'
25043 5' -65.2 NC_005336.1 + 70677 0.66 0.495627
Target:  5'- gGCGCGCgCGCaCGUucuGGaaGUCCgugcgCCCCa -3'
miRNA:   3'- -CGCGCG-GCG-GCG---CCagCAGGa----GGGGa -5'
25043 5' -65.2 NC_005336.1 + 11678 0.66 0.495627
Target:  5'- cGUGCGCCGCaGCaGcgCGaCCUCCgCCUc -3'
miRNA:   3'- -CGCGCGGCGgCGcCa-GCaGGAGG-GGA- -5'
25043 5' -65.2 NC_005336.1 + 93458 0.66 0.477766
Target:  5'- cGCgGCGCCGCCuGCGGcUGUCuCUCgagcaCCg -3'
miRNA:   3'- -CG-CGCGGCGG-CGCCaGCAG-GAGg----GGa -5'
25043 5' -65.2 NC_005336.1 + 130168 0.67 0.460227
Target:  5'- uCGCGCaccagGCCGCGcUCGcgcgcaUCUUCCCCUc -3'
miRNA:   3'- cGCGCGg----CGGCGCcAGC------AGGAGGGGA- -5'
25043 5' -65.2 NC_005336.1 + 15152 0.66 0.474231
Target:  5'- -aGCGCaGCCGCGGUCGgcggguucaggcgCCacggCCCUg -3'
miRNA:   3'- cgCGCGgCGGCGCCAGCa------------GGa---GGGGa -5'
25043 5' -65.2 NC_005336.1 + 89280 0.66 0.483982
Target:  5'- gGCGCGucccgacaggccuuCCGCCGCGGgcgCGgcgCC-CCCa- -3'
miRNA:   3'- -CGCGC--------------GGCGGCGCCa--GCa--GGaGGGga -5'
25043 5' -65.2 NC_005336.1 + 43817 0.66 0.522967
Target:  5'- gGCGaGCCGCgCGCGGcUCGUgCgaggCCCg- -3'
miRNA:   3'- -CGCgCGGCG-GCGCC-AGCAgGa---GGGga -5'
25043 5' -65.2 NC_005336.1 + 133993 0.67 0.468954
Target:  5'- cGUGCGCCcuGCCGcCGGagaUCGUgaCCUCCauCCUg -3'
miRNA:   3'- -CGCGCGG--CGGC-GCC---AGCA--GGAGG--GGA- -5'
25043 5' -65.2 NC_005336.1 + 39004 0.66 0.522967
Target:  5'- aGCGCGuCCGCgagccccgGCGGcgCGaCCUCCUCg -3'
miRNA:   3'- -CGCGC-GGCGg-------CGCCa-GCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 87196 0.66 0.495627
Target:  5'- uCGCGUCaCCGUGGUCacguUCCgcagCCCCg -3'
miRNA:   3'- cGCGCGGcGGCGCCAGc---AGGa---GGGGa -5'
25043 5' -65.2 NC_005336.1 + 124050 0.67 0.468954
Target:  5'- uCGCGCgGCCGCGGcgcUCGcUCagcgaagagCCCCg -3'
miRNA:   3'- cGCGCGgCGGCGCC---AGC-AGga-------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 80248 0.67 0.460227
Target:  5'- gGCGCGCCcuccCUGUGGUCGcUgCUCgCCa -3'
miRNA:   3'- -CGCGCGGc---GGCGCCAGC-AgGAGgGGa -5'
25043 5' -65.2 NC_005336.1 + 13641 0.66 0.522967
Target:  5'- cUGgGCCGCUGCGccgaggacGUCGcgcucuUCCUCCUCUu -3'
miRNA:   3'- cGCgCGGCGGCGC--------CAGC------AGGAGGGGA- -5'
25043 5' -65.2 NC_005336.1 + 138897 0.66 0.504672
Target:  5'- -aGCGCgGaggGCgGGUCG-CCUCCCCg -3'
miRNA:   3'- cgCGCGgCgg-CG-CCAGCaGGAGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.