miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 5' -55.1 NC_005336.1 + 130102 0.66 0.918784
Target:  5'- aCGaGAGCGcGGccgcCGCCGAGGAGGccGCc -3'
miRNA:   3'- aGCaCUCGCaCUu---GCGGCUCUUCC--CG- -5'
25045 5' -55.1 NC_005336.1 + 130068 0.72 0.652339
Target:  5'- gCGcGAGCGUGGACGCgCGAaauaacgcGGGCa -3'
miRNA:   3'- aGCaCUCGCACUUGCG-GCUcuu-----CCCG- -5'
25045 5' -55.1 NC_005336.1 + 128879 1.13 0.001919
Target:  5'- uUCGUGAGCGUGAACGCCGAGAAGGGCg -3'
miRNA:   3'- -AGCACUCGCACUUGCGGCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 127984 0.66 0.912971
Target:  5'- -aGUGAaccGCGUGAacgcgcgcACGCCGAGcgcGGCc -3'
miRNA:   3'- agCACU---CGCACU--------UGCGGCUCuucCCG- -5'
25045 5' -55.1 NC_005336.1 + 126988 0.68 0.842245
Target:  5'- aCGUgGAGCGcauGCGCCGgcugcuGGAcgAGGGCg -3'
miRNA:   3'- aGCA-CUCGCacuUGCGGC------UCU--UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 123533 0.67 0.894108
Target:  5'- gCGUggugGAGCGcGAGCGCa-AGAcGGGCa -3'
miRNA:   3'- aGCA----CUCGCaCUUGCGgcUCUuCCCG- -5'
25045 5' -55.1 NC_005336.1 + 123339 0.71 0.71327
Target:  5'- gCGcGuGCGUGGGCGgCGAGAAcucgguaacGGGCu -3'
miRNA:   3'- aGCaCuCGCACUUGCgGCUCUU---------CCCG- -5'
25045 5' -55.1 NC_005336.1 + 121425 0.72 0.642077
Target:  5'- cUCGcGAGUGcgaGGAUcCCGAGGAGGGCu -3'
miRNA:   3'- -AGCaCUCGCa--CUUGcGGCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 120908 0.66 0.918784
Target:  5'- uUCGUGuGGCGcaaGGCGCuCGAGGGcGGGUu -3'
miRNA:   3'- -AGCAC-UCGCac-UUGCG-GCUCUU-CCCG- -5'
25045 5' -55.1 NC_005336.1 + 118026 0.71 0.723234
Target:  5'- cCG-GuGCGUGAGCGCCGuuuacguGAAGGcGUu -3'
miRNA:   3'- aGCaCuCGCACUUGCGGCu------CUUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 116478 0.66 0.918784
Target:  5'- ---cGGGCGUGGuguacacgGCGCCGAGca-GGCu -3'
miRNA:   3'- agcaCUCGCACU--------UGCGGCUCuucCCG- -5'
25045 5' -55.1 NC_005336.1 + 116349 0.84 0.158077
Target:  5'- gCGUGGgguugcugaugcGCGUGAACcCCGAGAAGGGCu -3'
miRNA:   3'- aGCACU------------CGCACUUGcGGCUCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 115642 0.68 0.850282
Target:  5'- cUCGUGGGCcagacGAACcUCGAGGAGGuGCc -3'
miRNA:   3'- -AGCACUCGca---CUUGcGGCUCUUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 114784 0.67 0.906301
Target:  5'- aCGUGGGCGUGGagauccuGCGCuCGcuGGAGGa- -3'
miRNA:   3'- aGCACUCGCACU-------UGCG-GCu-CUUCCcg -5'
25045 5' -55.1 NC_005336.1 + 113388 0.67 0.894108
Target:  5'- gCGUGugccGCGUGcugcacaaacGCGUCGAcGAGGGCg -3'
miRNA:   3'- aGCACu---CGCACu---------UGCGGCUcUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 112006 0.66 0.939632
Target:  5'- -gGUG-GCGUGu-CGCCGGcacgcGAugcAGGGCa -3'
miRNA:   3'- agCACuCGCACuuGCGGCU-----CU---UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 111402 0.66 0.918213
Target:  5'- cCG-GAGcCG-GAGcCGCCGAcgagcgccauccuGAAGGGCg -3'
miRNA:   3'- aGCaCUC-GCaCUU-GCGGCU-------------CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 110105 0.72 0.672807
Target:  5'- aCGUGcGCGUGGAacacgUGCCGc-GAGGGCa -3'
miRNA:   3'- aGCACuCGCACUU-----GCGGCucUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 107452 0.67 0.905057
Target:  5'- gCGUGAcggaggcgcgcgcgGCGcUGAGCuGCCGAGAGaucGGCu -3'
miRNA:   3'- aGCACU--------------CGC-ACUUG-CGGCUCUUc--CCG- -5'
25045 5' -55.1 NC_005336.1 + 104191 0.73 0.611274
Target:  5'- gCGUGGuGCGccUGAACGCCuuccucGAGcAGGGCg -3'
miRNA:   3'- aGCACU-CGC--ACUUGCGG------CUCuUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.